thelovelab / rnaseqDTULinks
RNA-seq workflow: differential transcript usage
☆22Updated 2 years ago
Alternatives and similar repositories for rnaseqDTU
Users that are interested in rnaseqDTU are comparing it to the libraries listed below
Sorting:
- ☆38Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ☆72Updated 2 years ago
- Genomic Association Tester☆32Updated 2 years ago
- ☆33Updated 10 months ago
- ☆13Updated 8 years ago
- Define regions in the genome☆33Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- ☆23Updated 4 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆35Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- ☆33Updated 3 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- QDNAseq package for Bioconductor☆52Updated last year