RNA-seq workflow: differential transcript usage
☆23Aug 20, 2023Updated 2 years ago
Alternatives and similar repositories for rnaseqDTU
Users that are interested in rnaseqDTU are comparing it to the libraries listed below
Sorting:
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 3 months ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Dec 11, 2025Updated 2 months ago
- Single-cell Bisulfite Sequencing Data Mapping☆12May 19, 2021Updated 4 years ago
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆27Jun 21, 2023Updated 2 years ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated last year
- ☆15Jan 18, 2023Updated 3 years ago
- ☆17May 15, 2024Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆124Feb 5, 2026Updated last month
- microRNA PREdiction From small RNA-seq data☆31Dec 28, 2017Updated 8 years ago
- ☆23Nov 9, 2025Updated 4 months ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 3 months ago
- A Python library for interacting with ENA's API☆25Aug 10, 2021Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆57Jul 14, 2025Updated 7 months ago
- Analysis Pipeline to analyze Nanopore RNAseq data☆29Mar 1, 2022Updated 4 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆156Jan 25, 2024Updated 2 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Dec 23, 2019Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated last year
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Dec 1, 2025Updated 3 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆167Oct 2, 2025Updated 5 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆65Oct 11, 2024Updated last year
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Sep 24, 2015Updated 10 years ago
- An R implementation of the SINCERA pipeline for single cell RNA-seq profiling analysis☆27Jan 27, 2021Updated 5 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆26Oct 17, 2018Updated 7 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Dec 8, 2020Updated 5 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Oct 7, 2024Updated last year
- MANOVA.RM☆11Feb 7, 2025Updated last year
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 8 months ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- RNA-seq workflow: exploratory analysis and differential expression☆82Nov 14, 2023Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Feb 9, 2021Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 3 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes☆34Feb 16, 2024Updated 2 years ago