RNA-seq workflow: differential transcript usage
☆23Aug 20, 2023Updated 2 years ago
Alternatives and similar repositories for rnaseqDTU
Users that are interested in rnaseqDTU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆28Jun 21, 2023Updated 2 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Mar 9, 2026Updated 3 months ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated last year
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆27Oct 17, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Updated this week
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆33Dec 1, 2025Updated 6 months ago
- ☆16Aug 3, 2018Updated 7 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆32Feb 9, 2021Updated 5 years ago
- ☆15Jan 18, 2023Updated 3 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆159Jan 25, 2024Updated 2 years ago
- microRNA PREdiction From small RNA-seq data☆32Dec 28, 2017Updated 8 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Analysis Pipeline to analyze Nanopore RNAseq data☆29Mar 1, 2022Updated 4 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Feb 7, 2024Updated 2 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆166Updated this week
- ☆11Aug 21, 2018Updated 7 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆132Apr 10, 2026Updated 2 months ago
- ☆23May 1, 2026Updated last month
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- RNA-seq workflow: exploratory analysis and differential expression☆80Apr 14, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Dec 8, 2020Updated 5 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆30Dec 23, 2019Updated 6 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆36Oct 7, 2024Updated last year
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 6 months ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- Human embryonic cell altas☆13Dec 31, 2019Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 4 years ago
- ☆46May 4, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RAGE-seq scripts☆18Aug 30, 2021Updated 4 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 10 months ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 6 months ago
- Estimation of Promoter Activity from RNA-Seq data☆59Jul 14, 2025Updated 11 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆67Oct 11, 2024Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆110Jun 11, 2026Updated last week