RNA-seq workflow: differential transcript usage
☆23Aug 20, 2023Updated 2 years ago
Alternatives and similar repositories for rnaseqDTU
Users that are interested in rnaseqDTU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆28Jun 21, 2023Updated 3 years ago
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Mar 9, 2026Updated 5 months ago
- ☆17May 15, 2024Updated 2 years ago
- Scripts for processing single liver cells RNA-Seq 10X Genomics Data☆27Oct 17, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Aug 3, 2026Updated 2 weeks ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- ☆15Jan 18, 2023Updated 3 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆33Dec 1, 2025Updated 8 months ago
- ☆16Aug 3, 2018Updated 8 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆32Feb 9, 2021Updated 5 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Jul 7, 2018Updated 8 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bam Read Index - Extract alignments from a bam file by readname☆29Apr 22, 2024Updated 2 years ago
- Analysis Pipeline to analyze Nanopore RNAseq data☆29Mar 1, 2022Updated 4 years ago
- RNA-seq workflow: exploratory analysis and differential expression☆80Apr 14, 2026Updated 4 months ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Feb 7, 2024Updated 2 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆168Jun 14, 2026Updated 2 months ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 8 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆135Apr 10, 2026Updated 4 months ago
- ☆24May 1, 2026Updated 3 months ago
- ☆11Aug 21, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Dec 8, 2020Updated 5 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆30Dec 23, 2019Updated 6 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆37Oct 7, 2024Updated last year
- An R package for computing the Quaternary Dot Product Scoring Statistic for signed and unsigned causal graphs.☆10Feb 8, 2019Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Sep 24, 2015Updated 10 years ago
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- A listing of the commands, protocols and other notes that I take on a daily basis☆11Oct 25, 2023Updated 2 years ago
- Human embryonic cell altas☆13Dec 31, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated last year
- ☆46May 4, 2024Updated 2 years ago
- RAGE-seq scripts☆18Aug 30, 2021Updated 4 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆111Jun 15, 2026Updated 2 months ago