thelovelab / rnaseqDTULinks
RNA-seq workflow: differential transcript usage
☆23Updated 2 years ago
Alternatives and similar repositories for rnaseqDTU
Users that are interested in rnaseqDTU are comparing it to the libraries listed below
Sorting:
- ☆34Updated last week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Define regions in the genome☆33Updated 3 years ago
- ☆38Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- ☆23Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago
- Genomic Association Tester☆34Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- ☆18Updated 6 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ☆13Updated 8 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- BigWig and BAM utilities☆98Updated last year
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Updated last year