zhaoc1 / nanoflowLinks
Bioinformatics pipeline for nanopore sequencing data
☆11Updated 6 years ago
Alternatives and similar repositories for nanoflow
Users that are interested in nanoflow are comparing it to the libraries listed below
Sorting:
- ☆19Updated 8 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- De novo VIral Genome Annotator☆23Updated 11 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 8 months ago
- Find Unique genomic Regions☆30Updated this week
- Influenza genome analysis Nextflow workflow☆22Updated last month
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Read contamination removal☆25Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- transposable element typing pipeline☆19Updated last year
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- ☆26Updated 2 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- ☆45Updated 3 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 7 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆45Updated last month
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆20Updated 7 years ago