shahab-sarmashghi / Skmer
Fast and accurate tool for estimating genomic distances between genome-skims
☆37Updated 11 months ago
Related projects: ⓘ
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆52Updated last year
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 4 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 4 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆38Updated 4 years ago
- Population-wide Deletion Calling☆34Updated 2 weeks ago
- Improved Phased Assembler☆27Updated 2 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 2 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 6 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 2 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆20Updated 7 years ago
- Identifying repeats in high-throughput sequencing data☆15Updated 5 months ago
- genomic alignment similarity search tool☆19Updated 3 months ago
- ☆12Updated 3 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Compute N50/NG50 and auN/auNG☆31Updated 11 months ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Bayesian reconstruction of ancient DNA fragments☆24Updated last month
- crab go snap snap☆28Updated 2 weeks ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆53Updated 2 weeks ago
- compare sequences to a shared root reference sequence.☆24Updated 2 years ago
- Scaffolding with Ultralong Reads☆14Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago