shahab-sarmashghi / SkmerLinks
Fast and accurate tool for estimating genomic distances between genome-skims
☆47Updated 2 years ago
Alternatives and similar repositories for Skmer
Users that are interested in Skmer are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- genomic alignment similarity search tool☆18Updated 7 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Updated 5 years ago
- Differential k-mer analysis☆39Updated last year
- GATB Minia assembly pipeline☆31Updated 2 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆46Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 5 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆45Updated last month
- ☆35Updated 5 years ago