pimbongaerts / radseq
Collection of Python scripts for parsing/analyses of RAD-seq data
☆22Updated 3 years ago
Alternatives and similar repositories for radseq:
Users that are interested in radseq are comparing it to the libraries listed below
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Infer demographic history with the Moran model☆47Updated this week
- Population assignment analysis using R☆17Updated 3 months ago
- Scripts for population genetics analysis☆19Updated 2 years ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- ☆38Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 5 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆48Updated last month
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆19Updated 5 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- R package for analysis of hybrids and hybrid zones☆19Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆27Updated 2 weeks ago
- ☆18Updated 7 years ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆31Updated 11 months ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- ☆26Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Modification of BayesAss 3.0.4 to allow handling of large SNP datasets☆15Updated 3 years ago
- ☆13Updated 7 years ago
- DFOIL: Introgression Testing for Five Taxa☆29Updated 3 years ago
- Repository for speciation genomics website☆24Updated 7 months ago