pimbongaerts / radseqLinks
Collection of Python scripts for parsing/analyses of RAD-seq data
☆23Updated 7 months ago
Alternatives and similar repositories for radseq
Users that are interested in radseq are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆48Updated 3 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago
- Population assignment analysis using R☆16Updated 3 months ago
- ☆42Updated 2 years ago
- Methods for examining PCA locally along the genome.☆83Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)☆10Updated 5 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Scripts for population genetics analysis☆20Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated last month
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆53Updated 3 months ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆26Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- GONE: Scripts, programs and an example data set☆47Updated 2 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆37Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆63Updated 11 months ago
- R package for analysis of hybrids and hybrid zones☆21Updated last year
- Prepare XML input files for divergence-time estimation with SNAPP☆19Updated 2 years ago
- ☆18Updated 2 years ago
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆15Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago