☆13Dec 3, 2024Updated last year
Alternatives and similar repositories for slimflow
Users that are interested in slimflow are comparing it to the libraries listed below
Sorting:
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆18Feb 19, 2026Updated last month
- a short graduate population biology course☆13Feb 22, 2023Updated 3 years ago
- Distribution maps and niche models for venomous snakes.☆12Updated this week
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jul 28, 2025Updated 7 months ago
- ☆10Sep 11, 2020Updated 5 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 2 months ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 2 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Feb 28, 2026Updated 3 weeks ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆17Jul 25, 2025Updated 7 months ago
- Infer a tree sequence from genetic variation data.☆62Updated this week
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 4 years ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆213Updated this week
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Feb 26, 2026Updated 3 weeks ago
- Software for estimating genome-wide genealogies for thousands of samples☆41Oct 17, 2025Updated 5 months ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Mar 5, 2025Updated last year
- Course in population genomics at BiRC☆12Mar 9, 2026Updated last week
- Time-stratified f-statistics☆15Aug 1, 2025Updated 7 months ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆32Mar 8, 2025Updated last year
- ☆21Jan 11, 2024Updated 2 years ago
- ☆18Updated this week
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Jan 26, 2026Updated last month
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Feb 26, 2026Updated 3 weeks ago
- population genetic simulations with R and Shiny☆28Nov 3, 2024Updated last year
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Tools for describing and manipulating demographic models.☆19Updated this week
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 11 months ago
- A High Performance Interface to GBIF☆40Sep 14, 2025Updated 6 months ago
- An R package for estimating generalized additive mixed models with latent variables☆34Dec 21, 2025Updated 3 months ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- A library of standard population genetic models☆139Updated this week
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month
- Quick Read Quality Control☆20Feb 28, 2023Updated 3 years ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆12Sep 4, 2024Updated last year
- an R script for generating color combinations from Senzo Wada's "A Dictionary of Color Combinations"☆10Mar 18, 2019Updated 7 years ago
- ☆34Nov 11, 2025Updated 4 months ago
- Explore ploidy levels from NGS data alone☆44Jan 19, 2023Updated 3 years ago
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Dec 18, 2025Updated 3 months ago