Pipeline for generate Ks plots of transcriptome data.
☆12Dec 27, 2017Updated 8 years ago
Alternatives and similar repositories for FASTKs
Users that are interested in FASTKs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆16Jul 25, 2025Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Aug 16, 2026Updated 2 weeks ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Jul 5, 2026Updated last month
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated 2 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Aug 17, 2026Updated 2 weeks ago
- ☆11Aug 29, 2018Updated 8 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 9 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Helper scripts for processing and visualization of phylogenetics datasets☆32Feb 19, 2024Updated 2 years ago
- ☆14Jun 18, 2026Updated 2 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆41Aug 16, 2026Updated 2 weeks ago
- ☆19May 27, 2022Updated 4 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆24Sep 23, 2024Updated last year
- ☆25Oct 16, 2024Updated last year
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆30Aug 8, 2026Updated 3 weeks ago
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated last month
- ☆17Jun 21, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Dec 19, 2025Updated 8 months ago
- Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation…☆20Jun 5, 2026Updated 2 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- A collaborative notebook for genes and genomes☆13Aug 11, 2026Updated 3 weeks ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 6 years ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 4 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A statistical framework for ploidy estimation using NGS short-read data☆63Apr 5, 2018Updated 8 years ago
- NovelTree is a highly parallelized and computationally efficient phylogenomic workflow that infers gene families, gene family trees, spec…☆26Updated this week
- Plann: a command-line application for annotating plastome sequences☆13Aug 5, 2022Updated 4 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆76Jun 4, 2026Updated 2 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- ☆16Apr 11, 2026Updated 4 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 5 months ago