Alternatives and similar repositories for READv2

Users that are interested in READv2 are comparing it to the libraries listed below

• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆33Updated last year
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆33Updated 2 years ago
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆21Updated 3 months ago
• Sendrowski / fastDFE
  Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…
  ☆18Updated 2 weeks ago
• ChenHuaLab / Beta-PSMC
  ☆13Updated 4 months ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 6 years ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆38Updated 2 years ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆19Updated 2 years ago
• h836472 / ContScout
  ContScout sequence contamination filter tool
  ☆26Updated last month
• popgenmethods / LDhelmet
  Software package for estimating fine-scale recombination rate.
  ☆17Updated 4 years ago
• pangenome / gfalace
  lace up GFA files using panSN path name sub-ranges to coordinate the lacing
  ☆14Updated 6 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 7 months ago
• grenaud / ROHan
  Joint inference of heterozygosity rates and runs of homozygosity
  ☆17Updated last month
• c-zhou / polyGembler
  ☆16Updated 3 years ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 11 months ago
• MoritzBlumer / winpca
  WinPCA. A package for windowed principal component analysis.
  ☆44Updated this week
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 4 years ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated 3 weeks ago
• iganna / pannagram
  ☆33Updated this week
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆48Updated last year
• jacahill / hPSMC
  Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes
  ☆14Updated last year
• AntoineHo / HapPy
  Haploidy and Size Completeness Estimation
  ☆14Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• regevs / gamma_smc
  ☆21Updated 2 years ago
• NBISweden / GenErode
  GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …
  ☆29Updated 3 weeks ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆31Updated 4 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆14Updated 2 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆23Updated last week