therkildsen-lab / lcwgs-simulationLinks
☆16Updated 3 years ago
Alternatives and similar repositories for lcwgs-simulation
Users that are interested in lcwgs-simulation are comparing it to the libraries listed below
Sorting:
- ☆12Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆24Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 4 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- ☆16Updated 7 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago
- Deleterious mutation prediction pipeline☆13Updated 5 months ago
- Scripts of population genomics analysis☆35Updated 7 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆20Updated 6 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆12Updated last month
- ☆19Updated 2 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆19Updated 2 years ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Scripts to handle NGS data and other biological data☆21Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆27Updated 5 months ago
- Scripts that used in our chicken T2T manuscript.☆19Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 8 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- Some codes about evolutionary history of wheats☆8Updated last year
- scripts☆16Updated 6 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆15Updated 9 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆17Updated last year
- Selection outlier scan with population branch statistic☆13Updated last year