therkildsen-lab / lcwgs-simulation
☆16Updated 2 years ago
Alternatives and similar repositories for lcwgs-simulation:
Users that are interested in lcwgs-simulation are comparing it to the libraries listed below
- ☆12Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 5 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Updated 4 years ago
- Pooled Sequencing Analysis for Sex Signal☆11Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆31Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆24Updated 7 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- ☆16Updated 5 months ago
- Automated pipeline for running CoalHMM☆12Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- Selection outlier scan with population branch statistic☆13Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- ☆17Updated 2 years ago
- ☆27Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆20Updated 6 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆27Updated last month
- ☆18Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆19Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆35Updated 2 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 3 months ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- ☆19Updated 2 years ago
- Scripts of population genomics analysis☆35Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 6 months ago
- Deleterious mutation prediction pipeline☆13Updated 3 months ago
- scripts☆15Updated 6 years ago
- Use hifi to assembly the Sol genome, and dissecting Sol evo☆17Updated last year
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- Analyses of sex chromosome evolution in songbirds☆15Updated 5 years ago