pauline-ng / SIFT4G_Create_Genomic_DBLinks
Create genomic databases with SIFT predictions. Input is an organism's genomic DNA (.fa) file and the gene annotation file (.gtf). Output will be a database that can be used with SIFT4G_Annotator.jar to annotate VCF files.
☆30Updated 2 years ago
Alternatives and similar repositories for SIFT4G_Create_Genomic_DB
Users that are interested in SIFT4G_Create_Genomic_DB are comparing it to the libraries listed below
Sorting:
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last week
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- Computational Analysis of Gene Expression Evolution☆44Updated 3 months ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated last month
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- Best practices and workflow for genome annotation☆79Updated 8 months ago
- paml documentation and tutorials☆64Updated 6 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 11 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆50Updated 7 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Scripting analyses of genomes in Ensembl Plants☆40Updated 2 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 3 weeks ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 4 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆50Updated 3 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆59Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- ☆44Updated last year
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆24Updated 2 years ago
- ☆21Updated 6 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 10 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- ☆34Updated 4 years ago