Create genomic databases with SIFT predictions. Input is an organism's genomic DNA (.fa) file and the gene annotation file (.gtf). Output will be a database that can be used with SIFT4G_Annotator.jar to annotate VCF files.
☆35Sep 23, 2023Updated 2 years ago
Alternatives and similar repositories for SIFT4G_Create_Genomic_DB
Users that are interested in SIFT4G_Create_Genomic_DB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sorting Intolerant From Tolerant For Genomes☆32Nov 3, 2017Updated 8 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- ☆31Apr 7, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Official home of genome aligner based upon notion of Cactus graphs☆678Updated this week
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆92Jan 14, 2025Updated last year
- GONE: Scripts, programs and an example data set☆56May 12, 2026Updated last week
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated last month
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆174Apr 17, 2026Updated last month
- Application of pan-genome for population☆118Oct 26, 2025Updated 6 months ago
- ☆57Jun 12, 2025Updated 11 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆772Apr 15, 2026Updated last month
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 8 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 6 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated last year
- QTG_Finder, a QTL causal gene prioritization tool☆11Nov 9, 2024Updated last year
- SMC++ infers population history from whole-genome sequence data.☆175Jan 20, 2024Updated 2 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Joint inference of heterozygosity rates and runs of homozygosity☆20Dec 12, 2025Updated 5 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- General tools for genomic analyses.☆390Mar 25, 2026Updated last month
- ☆44May 8, 2024Updated 2 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 7 months ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆25Dec 15, 2025Updated 5 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆31Apr 2, 2026Updated last month
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 3 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Water demand forecast Shiny dashboard.☆11Oct 2, 2016Updated 9 years ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated last month
- conserved non-coding sequence☆17Feb 21, 2022Updated 4 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Aug 9, 2024Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆190Dec 19, 2024Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 3 years ago