Tissue-specific variant annotation
☆10Nov 19, 2018Updated 7 years ago
Alternatives and similar repositories for TiSAn
Users that are interested in TiSAn are comparing it to the libraries listed below
Sorting:
- Joint inference of heterozygosity rates and runs of homozygosity☆18Dec 12, 2025Updated 2 months ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Jan 21, 2026Updated last month
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Variant caller GUI + genetic disease analysis☆22Apr 29, 2020Updated 5 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 2 months ago
- gnomAD browser pre-ASHG 2018☆33Nov 2, 2020Updated 5 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Updated this week
- A fast and efficient read-only relocatable data structure for JSON like data, with C and Python APIs☆12Jan 5, 2026Updated last month
- Companion repo for ExAC paper, 2015☆33Oct 10, 2016Updated 9 years ago
- ☆38Feb 27, 2020Updated 6 years ago
- LongSom tool for long-reads☆11May 20, 2025Updated 9 months ago
- ☆10Feb 12, 2019Updated 7 years ago
- ☆16Nov 3, 2025Updated 4 months ago
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆11Feb 4, 2026Updated last month
- Analysis package for processing counts from genome-wide CRISPR/Cas9 screens☆16Feb 19, 2021Updated 5 years ago
- Basics of the OSCA book☆14Sep 29, 2025Updated 5 months ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 6 years ago
- EvoEF + evolutionary profile for ddG_bind prediction☆14Oct 17, 2025Updated 4 months ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆146Feb 17, 2026Updated 2 weeks ago
- Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)☆10Jul 22, 2020Updated 5 years ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆18Nov 18, 2025Updated 3 months ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated last week
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- ☆13Feb 24, 2026Updated last week
- Client side iobio library for building and executing iobio commands☆10Dec 31, 2018Updated 7 years ago
- ☆12Jan 29, 2025Updated last year
- Statistical inference of recent positive selection using IBD segments☆14Sep 23, 2025Updated 5 months ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- ☆27Sep 10, 2025Updated 5 months ago
- CliniDeID automatically de-identifies clinical text notes according to the HIPAA Safe Harbor method. It accurately finds identifiers and …☆10Aug 13, 2023Updated 2 years ago
- ☆15Apr 2, 2025Updated 11 months ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Oct 15, 2025Updated 4 months ago
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆12Jun 11, 2019Updated 6 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 3 years ago