Alternatives and similar repositories for SelectionHapStats

Users that are interested in SelectionHapStats are comparing it to the libraries listed below

• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆52Updated 7 years ago
• tsackton / linked-selection
  ☆24Updated 8 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆48Updated 2 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated 9 months ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆22Updated last year
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆48Updated 4 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆85Updated last year
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆68Updated 5 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆54Updated 3 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆44Updated 6 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated 2 weeks ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆31Updated last week
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆27Updated 7 years ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated 11 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 6 months ago
• Popgen48 / scalepopgen
  ☆25Updated last year
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆21Updated last year
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago