ngarud / SelectionHapStatsLinks
SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to visualize the signatures of selective sites.
☆28Updated 7 years ago
Alternatives and similar repositories for SelectionHapStats
Users that are interested in SelectionHapStats are comparing it to the libraries listed below
Sorting:
- ☆24Updated 8 years ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆50Updated 2 weeks ago
- ☆45Updated 9 years ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Updated 2 years ago
- A program to call variants from genome alignment☆81Updated 9 months ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆77Updated 4 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 3 years ago
- Methods for examining PCA locally along the genome.☆88Updated last year
- Estimate recombination rates from population genetic data☆71Updated 5 years ago
- Assessing confidence in introgression among four populations☆28Updated 4 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Population genetics analyses from NGS data☆26Updated 4 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆42Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆95Updated 9 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated 2 years ago
- ☆54Updated 7 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago