arq5x / bedtools2
bedtools - the swiss army knife for genome arithmetic
☆958Updated last month
Alternatives and similar repositories for bedtools2:
Users that are interested in bedtools2 are comparing it to the libraries listed below
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆803Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,428Updated 6 months ago
- The next version of bwa-mem☆735Updated 6 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆720Updated this week
- Graph-based alignment (Hierarchical Graph FM index)☆495Updated 3 months ago
- Java utilities for Bioinformatics☆492Updated last week
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆467Updated last week
- Transcript assembly and quantification for RNA-Seq☆412Updated this week
- A fast and sensitive gapped read aligner☆692Updated 2 months ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,267Updated last week
- Tools to process and analyze deep sequencing data.☆697Updated this week
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆487Updated 3 weeks ago
- Near-optimal RNA-Seq quantification☆673Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆808Updated 5 months ago
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆658Updated this week
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆406Updated last month
- A single molecule sequence assembler for genomes large and small.☆669Updated 2 weeks ago
- A quality control analysis tool for high throughput sequencing data☆479Updated last year
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆428Updated 11 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆793Updated 7 months ago
- Fast genome-wide functional annotation through orthology assignment☆588Updated 9 months ago
- Structural variation caller using third generation sequencing☆576Updated last week
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆984Updated last week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆797Updated this week
- Tools for handling Unique Molecular Identifiers in NGS data sets☆502Updated 4 months ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆808Updated last week
- The second version of the Kraken taxonomic sequence classification system☆761Updated this week
- Bioinformatics code libraries and scripts☆513Updated last week
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆457Updated last month
- Trinity RNA-Seq de novo transcriptome assembly☆849Updated 2 weeks ago