arq5x / bedtools2Links
bedtools - the swiss army knife for genome arithmetic
☆1,021Updated 10 months ago
Alternatives and similar repositories for bedtools2
Users that are interested in bedtools2 are comparing it to the libraries listed below
Sorting:
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆862Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,526Updated 8 months ago
- Trinity RNA-Seq de novo transcriptome assembly☆881Updated last year
- Graph-based alignment (Hierarchical Graph FM index)☆525Updated last week
- Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations☆716Updated last week
- A fast and sensitive gapped read aligner☆769Updated last week
- Tools to process and analyze deep sequencing data.☆752Updated 6 months ago
- MACS -- Model-based Analysis of ChIP-Seq☆768Updated last week
- Near-optimal RNA-Seq quantification☆720Updated 2 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,417Updated 3 weeks ago
- The next version of bwa-mem☆816Updated 3 months ago
- Java utilities for Bioinformatics☆516Updated this week
- python module to plot beautiful and highly customizable genome browser tracks☆862Updated last year
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,026Updated last year
- A quality control analysis tool for high throughput sequencing data☆578Updated last month
- A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.☆550Updated 8 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆530Updated this week
- Bioinformatics code libraries and scripts☆555Updated 6 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆859Updated last year
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆696Updated 3 months ago
- SRA Tools☆1,300Updated this week
- Tools for working with SAM/BAM data☆605Updated last year
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆877Updated last week
- Cutadapt removes adapter sequences from sequencing reads☆570Updated 3 weeks ago
- Phylogenetic orthology inference for comparative genomics☆829Updated 6 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆460Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆537Updated 2 weeks ago
- The second version of the Kraken taxonomic sequence classification system☆866Updated last week
- Haplotype VCF comparison tools☆455Updated 2 years ago
- Transcript assembly and quantification for RNA-Seq☆485Updated last month