giuliospinozzi / arpir
Automatic RNA-Seq Pipelines with Interactive Report
☆25Updated 11 months ago
Alternatives and similar repositories for arpir:
Users that are interested in arpir are comparing it to the libraries listed below
- An R interface to the MEME Suite☆47Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated 9 months ago
- ☆48Updated 3 years ago
- Estimation of Promoter Activity from RNA-Seq data☆50Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- A list of alternative splicing analysis resources☆41Updated 2 months ago
- Detecting intron retention from RNA-Seq experiments☆54Updated 6 months ago
- Tutorial Website☆55Updated 3 years ago
- R package wrapping bedtools☆38Updated 5 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- A continually expanding collection of RNA-seq tools☆47Updated 3 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Reduce + Visualize Gene Ontology☆24Updated 2 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated last week
- Workshop • Analysis of RNA-seq data☆34Updated 10 months ago
- Pipeline for Cut&Tag analysis☆17Updated 2 weeks ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- documentation for trackViewer☆29Updated 5 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆36Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- ☆30Updated last month
- SingleCell Nanopore sequencing data analysis☆53Updated last month
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆69Updated 3 weeks ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆66Updated this week
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆107Updated last month
- Demultiplexes a fastq.☆44Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago