giuliospinozzi / arpirLinks
Automatic RNA-Seq Pipelines with Interactive Report
☆25Updated 3 months ago
Alternatives and similar repositories for arpir
Users that are interested in arpir are comparing it to the libraries listed below
Sorting:
- An R interface to the MEME Suite☆52Updated 3 months ago
- ☆50Updated 4 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 months ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Merge fastq files split over lanes☆20Updated 7 years ago
- A list of alternative splicing analysis resources☆46Updated 5 months ago
- This RNAseq data analysis tutorial is created for educational purpose☆32Updated last month
- ☆27Updated 2 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 7 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆48Updated 2 weeks ago
- ☆33Updated 4 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆51Updated 11 months ago
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆30Updated last year
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last month
- An interactive web-tool for RNA-seq analysis☆68Updated 7 months ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Updated 4 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 9 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆57Updated 3 months ago
- Tools for analyzing DNA methylation data☆43Updated this week
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆73Updated 2 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 5 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆53Updated 6 months ago
- Time-Course Multi-Omics data integration☆25Updated last year
- An efficient way to guess the library type of your RNA-Seq data.☆32Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago