jcmcnch / eASV-pipeline-for-515Y-926RLinks
This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
☆36Updated 3 months ago
Alternatives and similar repositories for eASV-pipeline-for-515Y-926R
Users that are interested in eASV-pipeline-for-515Y-926R are comparing it to the libraries listed below
Sorting:
- ☆51Updated 4 years ago
- ☆54Updated 5 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- MetaCompare☆19Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- dada2 formatted nifH database☆13Updated last year
- Dissimilarity Overlap Curve analysis☆11Updated 3 years ago
- code repo for mobileOG-db☆41Updated last month
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆63Updated 3 years ago
- ☆43Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆51Updated 4 years ago
- ☆48Updated last week
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆64Updated 2 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆48Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated 4 months ago
- ☆18Updated this week
- ☆24Updated 7 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- ARGpore2☆13Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆20Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆67Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated last year
- ☆60Updated this week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆82Updated 11 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Using ggtree to build phylogenetic trees☆50Updated last year