ed-lau / jcastLinks
Junction centric alternative splicing translator
☆20Updated 3 years ago
Alternatives and similar repositories for jcast
Users that are interested in jcast are comparing it to the libraries listed below
Sorting:
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- binned motif enrichment analysis and visualisation☆42Updated last week
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Updated last year
- ☆15Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- A single cell sequencing read simulator.☆33Updated last year
- documentation for trackViewer☆29Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 6 months ago
- ☆41Updated 3 years ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated 3 weeks ago
- Model-based analysis of APA using 3' end-linked reads☆10Updated 4 years ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 3 weeks ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- A tool for large scale omics datasets evaluation☆25Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago