hancockinformatics / pathlinkRLinks
Analysis and visualization of RNA-Seq results
☆30Updated this week
Alternatives and similar repositories for pathlinkR
Users that are interested in pathlinkR are comparing it to the libraries listed below
Sorting:
- ☆23Updated last year
- ☆23Updated last year
- ☆29Updated 2 years ago
- ☆18Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- ☆20Updated 2 years ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆17Updated 2 months ago
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆30Updated 7 months ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Multi-Enrichment Analysis of Gene Set Enrichment Analysis Results☆25Updated last week
- Pseudotime Analysis for Bulk Data☆18Updated last year
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 3 months ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- Peak caller for CUT&TAG data☆29Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- Docker container for genomics analyses in R.☆26Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 4 years ago
- 🧬 Gene analysis toolkit based on R☆59Updated 11 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Easy and comprehensive biological network reconstruction and analysis☆34Updated 2 months ago
- Tools for assessing clustering robustness☆28Updated 3 months ago
- An R for fast and flexible DNA methylation analysis☆35Updated last week