hancockinformatics / pathlinkRLinks
Analysis and visualization of RNA-Seq results
☆30Updated last week
Alternatives and similar repositories for pathlinkR
Users that are interested in pathlinkR are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 5 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 5 months ago
- ☆25Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆28Updated last year
- Pseudotime Analysis for Bulk Data☆16Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- ☆23Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆29Updated 5 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 4 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- An R package for time course sequencing data analysis☆20Updated 2 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆20Updated 3 weeks ago
- ☆19Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 2 weeks ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- Network construction Algorithm☆22Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆17Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆12Updated 10 months ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 2 years ago
- ☆20Updated 2 years ago
- Tools for assessing clustering robustness☆25Updated last week