Alternatives and similar repositories for pathlinkR

Users that are interested in pathlinkR are comparing it to the libraries listed below

• julienroyulaval / DESeq2-MultiBatch
  Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2
  ☆15Updated last month
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆15Updated 10 months ago
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆19Updated last month
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• dzhakparov / GeneSelectR
  ☆19Updated last year
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated last year
• fsvarn / GLASSx
  GLASS consortium
  ☆13Updated 3 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆15Updated 3 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 6 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆29Updated 6 years ago
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆36Updated 3 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆23Updated 2 years ago
• OSCA-source / OSCA.advanced
  Advanced steps of the OSCA book
  ☆13Updated last month
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated last year
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 5 years ago
• pwwang / immunopipe
  Integrative analysis for scTCR- and scRNA-seq data
  ☆20Updated 2 months ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• BMILAB / scAPAtrap
  ☆20Updated last year
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• federicogiorgi / corto
  corto (Correlation Tool): an R package to generate correlation-based DPI networks
  ☆20Updated 2 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• icbi-lab / Immunophenogram
  ☆40Updated 7 years ago
• jmw86069 / multienrichjam
  Analysis and Visualization of Multiple Gene Set Enrichments
  ☆25Updated last month
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆25Updated last week
• ebi-gene-expression-group / r-seurat-scripts
  Scripts to install as a Bioconda package for making workflows
  ☆18Updated 8 months ago
• rnabioco / scraps
  Single-cell RNA Processing Software
  ☆11Updated 2 weeks ago
• Core-Bioinformatics / bulkAnalyseR
  ☆28Updated last year
• guokai8 / VennDetail
  VennDetail: a bioconductor package for VennDiagram visualization and details extraction
  ☆29Updated last month