Alternatives and similar repositories for papers_with_data_to_mine

Users that are interested in papers_with_data_to_mine are comparing it to the libraries listed below

• crazyhottommy / compbio_tutorials
  My youtube programming scripts
  ☆59Updated last year
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆118Updated 6 months ago
• sib-swiss / single-cell-training
  SIB course on single cell transcriptomics by mostly using the Seurat pipeline
  ☆85Updated 5 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆98Updated 2 years ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆99Updated 4 years ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆112Updated last week
• mdozmorov / Immuno_notes
  Immunology-related bioinformatics data and tools
  ☆76Updated last year
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆119Updated 3 years ago
• wjawaid / enrichR
  An R interface to enrichR
  ☆93Updated 11 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆121Updated last year
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆103Updated 3 weeks ago
• mhorlbeck / ScreenProcessing
  ☆68Updated 2 years ago
• ucdavis-bioinformatics-training / 2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
  2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
  ☆36Updated 7 years ago
• GfellerLab / EPIC
  Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
  ☆83Updated 2 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆65Updated last year
• drisso / bioc2016singlecell
  Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor
  ☆80Updated 9 years ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated 2 years ago
• broadinstitute / 2020_scWorkshop
  Code and data repository for the 2020 physalia course on single cell RNA sequencing.
  ☆59Updated 5 years ago
• PierreBSC / Viral-Track
  ☆62Updated 5 years ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆122Updated 5 years ago
• liulab-dfci / bioinfo-combio
  The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
  ☆101Updated 3 years ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆93Updated last year
• liulab-dfci / RIMA_pipeline
  ☆89Updated 4 months ago
• snakemake-workflows / single-cell-rna-seq
  A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.
  ☆105Updated 3 years ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomics ecosystem
  ☆74Updated 2 months ago
• hbctraining / main
  ☆56Updated this week
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆153Updated last year
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆100Updated 9 years ago
• rhondabacher / ISMB2019_SingleCellTutorial
  Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…
  ☆41Updated 6 years ago