comprna / ORQASLinks
ORF Quantification pipeline for Alternative Splicing
☆16Updated 4 years ago
Alternatives and similar repositories for ORQAS
Users that are interested in ORQAS are comparing it to the libraries listed below
Sorting:
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Updated 2 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Updated 3 years ago
- ☆17Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- ☆23Updated 4 years ago
- ☆34Updated 2 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Updated 2 years ago
- An R package to process and analyze transcriptomic data☆18Updated 7 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 5 months ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆13Updated last month
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Updated 2 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.☆22Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 2 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated last month
- interactive plots for differential expression analysis☆34Updated 7 months ago
- omics data analysis using clusterProfiler ;)☆15Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Updated 2 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- End-guided RNA assembler☆15Updated last month
- Benchmarking long-read RNA-seq analysis tools☆27Updated 11 months ago
- iread☆25Updated 4 years ago