Alternatives and similar repositories for ORQAS

Users that are interested in ORQAS are comparing it to the libraries listed below

• ohlerlab / RiboseQC
  Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
  ☆18Updated 2 years ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆15Updated 6 years ago
• lcalviell / ORFquant
  An R package for Splice-aware quantification of translation using Ribo-seq data
  ☆19Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆36Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆40Updated 3 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 6 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆16Updated 4 months ago
• splicebox / MntJULiP
  Comprehensive and scalable differential splicing analyses
  ☆17Updated last month
• flemingtonlab / SpliceTools
  ☆17Updated last year
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• Xinglab / rMATS-long
  ☆34Updated 3 weeks ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆19Updated last week
• AngelCampos / txtools
  An R package to process and analyze transcriptomic data
  ☆18Updated 5 months ago
• Acribbs / TallyNN
  single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)
  ☆13Updated 2 years ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated last month
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• mrcuizhe / interacCircos
  An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot
  ☆28Updated 3 years ago
• genemine / iread
  iread
  ☆25Updated 4 years ago
• YuLab-SMU / clusterProfiler_protocol
  omics data analysis using clusterProfiler ;)
  ☆15Updated last year
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• ShixiangWang / sigflow
  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
  ☆29Updated last year
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• ClarkLaboratory / IsoVis
  IsoVis enables fast and informative visualization of isoform structures and expression levels.
  ☆13Updated 2 weeks ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆25Updated 3 months ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 3 years ago
• HLee-Six / colon_microbiopsies
  Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"
  ☆11Updated 4 years ago
• bioinform / ecTMB
  ☆18Updated 4 years ago