comprna / ORQAS
ORF Quantification pipeline for Alternative Splicing
☆16Updated 3 years ago
Alternatives and similar repositories for ORQAS:
Users that are interested in ORQAS are comparing it to the libraries listed below
- ☆23Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- An R package for Splice-aware quantification of translation using Ribo-seq data☆18Updated last year
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆17Updated last year
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- ☆15Updated 2 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last week
- An R package to process and analyze transcriptomic data☆16Updated 5 months ago
- isoCirc☆10Updated last year
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 8 months ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆14Updated 4 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆11Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- ☆18Updated 7 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆28Updated 2 months ago
- Comprehensive and scalable differential splicing analyses☆15Updated last week
- ☆12Updated 8 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated 2 months ago
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- ☆21Updated 8 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Long read to rMATS☆31Updated last year
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆9Updated last month
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago