ORF Quantification pipeline for Alternative Splicing
☆16May 11, 2021Updated 5 years ago
Alternatives and similar repositories for ORQAS
Users that are interested in ORQAS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for Splice-aware quantification of translation using Ribo-seq data☆21Dec 20, 2023Updated 2 years ago
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated 2 weeks ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆20Aug 9, 2023Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 4 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆11Jan 26, 2024Updated 2 years ago
- k-mer probability logo☆12Jan 20, 2023Updated 3 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆17Oct 6, 2020Updated 5 years ago
- Analyse RNA feature distributions.☆21Dec 16, 2024Updated last year
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- release version☆61Jul 29, 2022Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- Detection of differential translated genes using Ribo-seq☆17Apr 10, 2021Updated 5 years ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated last year
- ☆12Sep 8, 2021Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆38Jul 1, 2024Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆63Feb 15, 2024Updated 2 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago
- ☆11Jul 4, 2022Updated 4 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆18Jun 3, 2020Updated 6 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- Conversion of a BAM alignment to wiggle and bigwig coverage files, with flexible reporting options☆16May 7, 2019Updated 7 years ago
- ☆20Sep 28, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- 📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.☆14Mar 5, 2018Updated 8 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- ☆25May 16, 2020Updated 6 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 5 months ago
- Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…☆17Jul 20, 2026Updated 3 weeks ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated 2 years ago
- km : a software for RNA-seq investigation using k-mer decomposition☆11Apr 8, 2025Updated last year