TranslationalBioinformaticsUnit / GeneSetCluster
a tool for summarizing and integrating gene-set analysis results
☆16Updated 8 months ago
Alternatives and similar repositories for GeneSetCluster:
Users that are interested in GeneSetCluster are comparing it to the libraries listed below
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last week
- workshop website on readthedocs☆19Updated last week
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- ☆27Updated last year
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆25Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 8 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆23Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- R/Bioconductor package for working with 10x scATACseq data☆39Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- ☆32Updated last year
- Quantifying copy number signatures from absolute copy number profiles☆24Updated last month
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 5 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 5 years ago
- Workshop • Analysis of RNA-seq data☆35Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago
- ☆38Updated 2 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 4 years ago