TranslationalBioinformaticsUnit / GeneSetCluster
a tool for summarizing and integrating gene-set analysis results
☆16Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for GeneSetCluster
- Interactive R package to quantify, analyse and visualise alternative splicing☆35Updated this week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 2 months ago
- An R package to analyze single-cell V(D)J data☆24Updated 11 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- ☆26Updated 11 months ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- SCASA: Single cell transcript quantification tool☆19Updated 11 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆20Updated this week
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Bead-based single-cell atac processing☆31Updated 2 years ago
- Summer school course materials collection☆25Updated 6 years ago
- binned motif enrichment analysis and visualisation☆38Updated last week
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆37Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated last year
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- R package wrapping bedtools☆37Updated 2 months ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆20Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 4 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆26Updated last year
- RNA editing tests☆16Updated 4 years ago
- ☆37Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Scripts to install as a Bioconda package for making workflows☆17Updated last month
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- Identify and correct invalid gene symbols☆55Updated 5 months ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆25Updated 3 years ago