A Python library to work with high-throughput sequencing data in the context of data integration
☆14May 24, 2017Updated 8 years ago
Alternatives and similar repositories for htsint
Users that are interested in htsint are comparing it to the libraries listed below
Sorting:
- My blog.☆16Aug 8, 2025Updated 6 months ago
- Emacs major mode to edit Magic: the Gathering decks.☆11May 30, 2025Updated 9 months ago
- Compilation of resources for a reproducible workflow in R☆12Feb 8, 2026Updated 3 weeks ago
- Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic element☆11Sep 21, 2020Updated 5 years ago
- A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.☆18Mar 9, 2015Updated 10 years ago
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 8 years ago
- ☆19Apr 14, 2021Updated 4 years ago
- Implementation scripts of Machine Learning algorithms on Scikit-learn and Keras for complete novice..☆18Jul 22, 2018Updated 7 years ago
- Git LFS for magit!☆17Oct 31, 2022Updated 3 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 4 years ago
- my PhD thesis on Bayesian inference☆27Sep 2, 2013Updated 12 years ago
- Single Cell Analysis course at Cold Spring Harbor Laboratory 2017☆23Oct 19, 2017Updated 8 years ago
- make emacs' projectile and speedbar extensions work together☆27Aug 7, 2019Updated 6 years ago
- MaxQuant Automated Pipeline☆24Jun 13, 2020Updated 5 years ago
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Dec 1, 2025Updated 3 months ago
- Automatic RNA-Seq Pipelines with Interactive Report☆25Jun 1, 2025Updated 9 months ago
- Quickly navigate and search your emacs org trees; use this navigation to capture and organize. Built with the help of helm.☆28Nov 28, 2024Updated last year
- ☆30Mar 20, 2017Updated 8 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Aug 10, 2017Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Apr 25, 2023Updated 2 years ago
- Data and pipeline for Mortality in Puerto Rico after Hurricane Maria☆36Mar 15, 2023Updated 2 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Dec 20, 2010Updated 15 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- Moved to: https://github.com/maxplanck-ie/parkour2☆32Aug 24, 2022Updated 3 years ago
- ParaAntiProt: Paratope Prediction Using Antibody and Protein Language Models☆10Jul 16, 2024Updated last year
- Programmatically interact with Tamr☆11Jul 25, 2023Updated 2 years ago
- ☆10Jan 27, 2022Updated 4 years ago
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- Model Context Protocol (MCP) server for mapping clinical terminology to Observational Medical Outcomes Partnership (OMOP) concepts using …☆33Feb 19, 2026Updated 2 weeks ago
- Material for the DataLucence:Images course☆10Jun 14, 2017Updated 8 years ago
- This is the website for the Language Technology and Data Analysis Laboratory (LADAL) which is part of the School of Languages and Culture…☆14Jan 29, 2025Updated last year
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- ☆15Jul 10, 2025Updated 7 months ago
- A function invocation framework for Python☆11Feb 21, 2024Updated 2 years ago
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 10 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool☆34Nov 25, 2015Updated 10 years ago
- A very simple package with just one function for creating maps suitable for gifting:)☆35Nov 26, 2019Updated 6 years ago