univieCUBE / deepnogLinks
Protein orthologous group assignment with deep learning
☆28Updated 9 months ago
Alternatives and similar repositories for deepnog
Users that are interested in deepnog are comparing it to the libraries listed below
Sorting:
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 3 years ago
- PHANOTATE: a gene caller for phages.☆78Updated 11 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆45Updated 7 months ago
- Python bindings for the TaxonKit library☆40Updated 4 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last month
- ☆31Updated 10 months ago
- ☆33Updated 4 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 9 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆92Updated 5 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- ☆31Updated last month
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆77Updated 4 months ago
- ☆17Updated 3 years ago
- A package to annotate protein sequences☆60Updated 8 months ago
- UFCG: Universal Fungal Core Genes☆34Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- ☆41Updated 4 months ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 5 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 weeks ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 10 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆26Updated 3 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated last week
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year