Protein orthologous group assignment with deep learning
☆28Dec 16, 2025Updated 2 months ago
Alternatives and similar repositories for deepnog
Users that are interested in deepnog are comparing it to the libraries listed below
Sorting:
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated 6 months ago
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- A functional profiler for metagenomes using FracMinHash☆21Jul 14, 2025Updated 7 months ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- Approximate nearest neighbour search for microbial genomes based on hash metric☆61Dec 14, 2025Updated 2 months ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- ☆10Feb 14, 2022Updated 4 years ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 6 months ago
- ☆11Sep 16, 2021Updated 4 years ago
- Development repo for pyani-plus (the next iteration of pyani)☆25Mar 2, 2026Updated last week
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- The gview wiki migrated to GitHub.☆11Sep 3, 2020Updated 5 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 6 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Jun 6, 2024Updated last year
- ☆13Mar 28, 2018Updated 7 years ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Mar 2, 2026Updated last week
- ☆14Dec 25, 2025Updated 2 months ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 2 months ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆12Apr 14, 2022Updated 3 years ago
- Kinship In Mixed Model Analysis of RNA-seq☆15Apr 14, 2025Updated 10 months ago
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 6 years ago
- The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.☆38Apr 13, 2024Updated last year
- Bifrost graph gene caller.☆98Jan 20, 2026Updated last month
- MiGA: Microbial Genomes Atlas☆32Feb 10, 2026Updated 3 weeks ago
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Sep 5, 2019Updated 6 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Feb 23, 2020Updated 6 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Sep 23, 2025Updated 5 months ago
- ☆44Nov 20, 2021Updated 4 years ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated last month
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Jul 27, 2025Updated 7 months ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 3 months ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Mar 7, 2025Updated last year
- BEAV: Bacterial Element Annotation reVamped☆74Aug 21, 2025Updated 6 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆64Jan 19, 2026Updated last month