Protein orthologous group assignment with deep learning
☆30Dec 16, 2025Updated 5 months ago
Alternatives and similar repositories for deepnog
Users that are interested in deepnog are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn☆12Sep 10, 2021Updated 4 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- The gview wiki migrated to GitHub.☆11Sep 3, 2020Updated 5 years ago
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- ☆11Sep 16, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Mar 7, 2026Updated 2 months ago
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated 9 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56May 17, 2026Updated last week
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 4 months ago
- A functional profiler for metagenomes using FracMinHash☆21Apr 20, 2026Updated last month
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- ☆13Mar 28, 2018Updated 8 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆15Jun 6, 2024Updated last year
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.☆37Apr 13, 2024Updated 2 years ago
- ☆52Mar 29, 2026Updated 2 months ago
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Jan 2, 2019Updated 7 years ago
- ☆10Feb 14, 2022Updated 4 years ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated 9 months ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆13Apr 14, 2022Updated 4 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 5 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆67Aug 12, 2019Updated 6 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago
- ☆44Nov 20, 2021Updated 4 years ago
- A Python package for hubness analysis and high-dimensional data mining☆46May 31, 2024Updated last year
- Development repo for pyani-plus (the next iteration of pyani)☆33May 19, 2026Updated last week
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- finding conserved regions in highly diverse genomes☆16Updated this week
- A hierarchical deep learning framework for ncRNA-protein interaction prediction.☆14Nov 25, 2022Updated 3 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆37Apr 23, 2025Updated last year
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Renames headers in FASTA file☆13Jun 28, 2017Updated 8 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆66Jan 19, 2026Updated 4 months ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year