Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)
☆24Jan 22, 2020Updated 6 years ago
Alternatives and similar repositories for sci-fate_analysis
Users that are interested in sci-fate_analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and analysis pipeline for NASC-seq.☆11Jun 14, 2022Updated 3 years ago
- Tutorials on using latest dynamo package☆26Dec 21, 2025Updated 3 months ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 30, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 2 years ago
- ☆16Jul 9, 2024Updated last year
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- ☆20Jun 8, 2023Updated 2 years ago
- Scripts for building computational models of gene regulation with tensorflow☆27May 3, 2023Updated 2 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Aug 4, 2020Updated 5 years ago
- ☆47Apr 18, 2020Updated 5 years ago
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 3 years ago
- ☆26Dec 25, 2023Updated 2 years ago
- Code and paper repository for the ICML paper "Learning population level diffusions with generative recurrent networks"☆11May 26, 2016Updated 9 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Apr 14, 2021Updated 4 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Aug 26, 2022Updated 3 years ago
- ☆25May 14, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆40Mar 6, 2024Updated 2 years ago
- <<------ Use SnapATAC!!☆26Mar 15, 2019Updated 7 years ago
- R package☆27Aug 16, 2020Updated 5 years ago
- ☆57May 22, 2018Updated 7 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Dec 12, 2020Updated 5 years ago
- ☆43Jun 11, 2022Updated 3 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Feb 23, 2023Updated 3 years ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Scripts for using scanpy☆39Oct 20, 2025Updated 5 months ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆25May 18, 2021Updated 4 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- CellRank's reproducibility repository.☆16Jan 13, 2022Updated 4 years ago
- easy access to benchmark datasets☆50Aug 17, 2018Updated 7 years ago
- scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data☆10Jul 25, 2022Updated 3 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19May 5, 2019Updated 6 years ago