JunyueC / sci-fate_analysisLinks
Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)
☆24Updated 5 years ago
Alternatives and similar repositories for sci-fate_analysis
Users that are interested in sci-fate_analysis are comparing it to the libraries listed below
Sorting:
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- ☆32Updated 6 years ago
- ☆32Updated 5 months ago
- ☆16Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ☆27Updated 3 years ago
- ☆49Updated 10 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- ☆13Updated 11 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 3 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆50Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- ☆34Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago