JunyueC / sci-fate_analysisLinks
Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)
☆24Updated 5 years ago
Alternatives and similar repositories for sci-fate_analysis
Users that are interested in sci-fate_analysis are comparing it to the libraries listed below
Sorting:
- ☆48Updated 5 years ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- ☆33Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- ☆47Updated 7 months ago
- ☆49Updated last year
- scWGCNA☆61Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- CELLEX (CELL-type EXpression-specificity)☆43Updated 2 years ago
- ☆27Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- scRNA-seq cell type identification☆43Updated 5 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- ☆59Updated 11 months ago
- ☆42Updated 4 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆43Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated 11 months ago