Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.
☆30Oct 10, 2025Updated 10 months ago
Alternatives and similar repositories for CycleViz
Users that are interested in CycleViz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆87Jul 23, 2026Updated 3 weeks ago
- AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and …☆162Jun 18, 2024Updated 2 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆23Jul 22, 2026Updated 3 weeks ago
- Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.☆19Jul 28, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated last month
- extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.☆12Jan 24, 2022Updated 4 years ago
- Analyze 3'UTR usage in single-cell data.☆15Sep 25, 2021Updated 4 years ago
- Utility functions for FACETS☆40Oct 24, 2025Updated 9 months ago
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆13Jul 22, 2026Updated 3 weeks ago
- ☆13Sep 24, 2025Updated 10 months ago
- ☆25Apr 29, 2018Updated 8 years ago
- ☆18Feb 18, 2021Updated 5 years ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Accessing AlphaMissense Data Resources in R☆13Updated this week
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- CoRAL: Reconstruction of focal amplifications with long reads☆31Updated this week
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆17Nov 5, 2025Updated 9 months ago
- Scripts supporting identification of genomic features affecting survival time in cancer☆14Dec 6, 2018Updated 7 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- ☆12Oct 4, 2021Updated 4 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Apr 22, 2021Updated 5 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Jun 6, 2024Updated 2 years ago
- ChIA-PET Utilities☆13Dec 19, 2021Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆19Apr 9, 2026Updated 4 months ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆163Dec 25, 2025Updated 7 months ago
- ☆39Aug 14, 2019Updated 7 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 4 months ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- ☆48Apr 18, 2020Updated 6 years ago
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆123Jul 21, 2026Updated 3 weeks ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆36Nov 25, 2024Updated last year
- A heterogeneous OpenCL implementation of QuickVina2☆17Jan 7, 2023Updated 3 years ago