AmpliconSuite / CycleVizLinks
Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.
☆28Updated 3 weeks ago
Alternatives and similar repositories for CycleViz
Users that are interested in CycleViz are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆26Updated 2 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆20Updated last week
- RNA editing tests☆17Updated 5 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- ☆13Updated 8 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆40Updated last year
- ☆39Updated 5 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Statistically Significant loops from HiChIP data☆46Updated last year
- ☆17Updated 6 years ago
- Define regions in the genome☆33Updated 3 years ago
- Cellsnake tool main repo☆35Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆51Updated last year
- single-nucleus nanopore reads processing pipeline☆16Updated 2 years ago
- Micro DNA identification☆24Updated 4 years ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆15Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 11 months ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆19Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Detection and couting alternative TSS in single cells☆16Updated last year