ghzuo / CVTreeLinks
A whole-genome and alignment-free prokaryotic phylogeny tool
☆23Updated 10 months ago
Alternatives and similar repositories for CVTree
Users that are interested in CVTree are comparing it to the libraries listed below
Sorting:
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 7 years ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆32Updated 6 years ago
- Reference genome quality scores☆21Updated 5 years ago
- ☆18Updated 2 months ago
- ☆44Updated last year
- ☆26Updated 4 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- ☆17Updated 2 years ago
- Genomic sequence aligner☆33Updated 3 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Updated 3 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 3 years ago
- An RNA virus strain-level identification tool for short reads.☆23Updated this week
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Updated 2 months ago
- Synteny Mapping and Analysis Program☆30Updated this week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆31Updated 4 months ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 6 months ago
- AC-DIAMOND is a DNA-protein alignment tool☆16Updated 2 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 6 years ago