ghzuo / CVTree
A whole-genome and alignment-free prokaryotic phylogeny tool
☆24Updated 2 months ago
Alternatives and similar repositories for CVTree:
Users that are interested in CVTree are comparing it to the libraries listed below
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆17Updated 8 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 6 years ago
- Find Unique genomic Regions☆29Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆32Updated this week
- Manipulate and generate figures for trees in Newick format☆21Updated last month
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 4 months ago
- ☆16Updated 11 months ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated this week
- ☆22Updated last year
- ☆43Updated 11 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last week
- An R package to infer and analyze synteny networks from protein sequences☆27Updated 2 months ago
- Integrative virome pipeline☆12Updated 4 months ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 6 years ago
- Taxon-aware analysis of clustered protein sequences☆30Updated 8 months ago
- MIRA sequence assembler☆28Updated 2 months ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 2 months ago
- Code for detecting genomic island insertions in clades of microbes.☆19Updated last year
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆19Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 10 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 3 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆33Updated 5 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Automated synthetic microbial Community Design☆13Updated 3 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆14Updated 2 months ago
- orthology assignment using phylogenetic and network analyses☆46Updated 4 months ago