Alternatives and similar repositories for CVTree

Users that are interested in CVTree are comparing it to the libraries listed below

• VIB-PSB / i-ADHoRe
  i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.
  ☆17Updated last year
• DRL / kinfin
  Taxon-aware analysis of clustered protein sequences
  ☆31Updated last year
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆11Updated 5 years ago
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 7 years ago
• KoslickiLab / MetagenomicKG
  ☆18Updated 3 months ago
• balabanmetin / uDance
  ☆44Updated last year
• AuReMe / mpwt
  Pathway Tools multiprocessing wrapper (for PathoLogic).
  ☆15Updated last month
• mathjeff / Mapper
  Genomic sequence aligner
  ☆33Updated 3 months ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated 2 years ago
• lpipes / AncestralClust
  AncestralClust
  ☆11Updated 6 months ago
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated 2 years ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated 2 years ago
• TGatter / LazyB
  Economic Genome Assembly from Low Coverage Illumina and Nanopore Data
  ☆19Updated 3 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated last week
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• songlab-cal / swga2
  ☆17Updated 2 years ago
• gwct / referee
  Reference genome quality scores
  ☆21Updated 5 years ago
• ablab / viralComplete
  viralComplete: BLAST-based viral completeness verification
  ☆24Updated 4 years ago
• simonwhelan / Divvier
  A program for divvying or partially filtering multiple sequence alignments
  ☆27Updated 6 years ago
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆26Updated 2 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆30Updated last month
• rikuu / Gap2Seq
  Gap2Seq is a gap filling and insertion genotyping tool.
  ☆22Updated last year
• PlantDr430 / BuscoOrthoPhylo
  Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
  ☆20Updated 6 years ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆31Updated 4 months ago
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆31Updated 6 years ago
• mmcco / RepeatScout
  The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…
  ☆16Updated 2 years ago
• NBISweden / nbis-meta
  A snakemake workflow for metagenomic projects
  ☆15Updated 2 years ago
• algo-cancer / CAMMiQ
  Metagenomics microbial abundance quantification
  ☆28Updated 3 years ago
• karubiotools / getSequenceInfo
  Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
  ☆14Updated 10 months ago