kwongj / roary2fripanLinks
Formats Roary output for viewing in FriPan
☆11Updated 7 years ago
Alternatives and similar repositories for roary2fripan
Users that are interested in roary2fripan are comparing it to the libraries listed below
Sorting:
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Neptune: Genomic Signature Discovery☆20Updated 8 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 7 years ago
- genomic alignment similarity search tool☆18Updated 2 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆26Updated this week
- Metagenomic binning suite☆29Updated 2 years ago
- ☆26Updated 4 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- Generation of pan-genome profile files using Roary output.☆9Updated 7 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- ☆20Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 weeks ago
- DarkHorse2 source code☆10Updated 3 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- Colinear block visualisation tool☆31Updated last year
- Strain Prediction and Analysis with Representative SEquence☆20Updated 7 months ago