kwongj / roary2fripanLinks
Formats Roary output for viewing in FriPan
☆11Updated 7 years ago
Alternatives and similar repositories for roary2fripan
Users that are interested in roary2fripan are comparing it to the libraries listed below
Sorting:
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 9 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆21Updated 2 years ago
- transposable element typing pipeline☆18Updated last year
- Quality control plotting for long reads☆10Updated last year
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Find Unique genomic Regions☆30Updated 3 months ago
- genomic alignment similarity search tool☆18Updated last month
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10Updated 7 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 6 months ago
- Generation of pan-genome profile files using Roary output.☆9Updated 7 years ago
- Program for finding horizontal gene transfer using BLAST result☆11Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- CFSAN Shigella Typing Pipeline☆14Updated last year