CshlSiepelLab / phastLinks
PHAST
☆75Updated this week
Alternatives and similar repositories for phast
Users that are interested in phast are comparing it to the libraries listed below
Sorting:
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆73Updated 3 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆112Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆103Updated 3 months ago
- Fast and accurate coordinate conversion between assemblies☆115Updated last week
- ☆35Updated 2 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆102Updated 7 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 8 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆107Updated 2 months ago
- web documentation for Trinotate☆48Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆58Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated 5 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 5 months ago
- accurate LiftOver tool for new genome assemblies☆134Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- reference-free transcriptome assembly for short and long reads☆109Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago