Alternatives and similar repositories for phast:

Users that are interested in phast are comparing it to the libraries listed below

• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated last month
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆66Updated 7 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago
• bergmanlab / drosophila-transposons
  Drosophila transposable element canonical sequences
  ☆28Updated 2 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆71Updated 3 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆90Updated last month
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated 2 weeks ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆88Updated last week
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆72Updated 3 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• tanghaibao / bio-pipeline
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆73Updated 10 months ago
• tao-bioinfo / gff3sort
  GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
  ☆49Updated 4 years ago
• yjx1217 / LRSDAY
  LRSDAY: Long-read Sequencing Data Analysis for Yeasts
  ☆31Updated last year
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆110Updated this week
• rhysf / Synima
  Synteny Imager
  ☆61Updated 7 months ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 3 months ago
• fbemm / onefc-oneasm
  Simple code snippets and data for the One Flowcell - One Assembly study
  ☆36Updated 7 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆113Updated 3 months ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 4 years ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated 5 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆97Updated last year
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆95Updated last month
• epi2me-labs / modbam2bed
  ☆47Updated 7 months ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆47Updated 2 years ago