PHAST
☆87Jul 9, 2026Updated 2 weeks ago
Alternatives and similar repositories for phast
Users that are interested in phast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆37Mar 27, 2019Updated 7 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 4 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆209Nov 23, 2025Updated 8 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Portable solution to generate genome alignment chains using lastz☆68Jul 15, 2026Updated last week
- PhyloAcc a software to detect the changes of conservation of a genomic region☆38May 11, 2026Updated 2 months ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last month
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆43Jan 3, 2026Updated 6 months ago
- Hierarchical Alignment Format☆185May 25, 2026Updated 2 months ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated 2 weeks ago
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆73Oct 16, 2023Updated 2 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆697Updated this week
- ☆12Sep 11, 2025Updated 10 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆251May 20, 2026Updated 2 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Synteny matrix representation with maximum likelihood pipeline☆16Jul 7, 2021Updated 5 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆254Jun 25, 2026Updated 3 weeks ago
- ☆12Sep 6, 2019Updated 6 years ago
- A genome completeness evaluation tool based on miniprot☆254Updated this week
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Updated this week
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- ☆190May 22, 2025Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆150Apr 13, 2026Updated 3 months ago
- ☆45Dec 11, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Identification of conserved non-coding sequences in plants☆47Jun 9, 2026Updated last month
- ☆19Nov 9, 2020Updated 5 years ago
- GFF toolkit☆16May 23, 2026Updated 2 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 3 months ago
- ☆20Jun 15, 2024Updated 2 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆24Feb 16, 2026Updated 5 months ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 7 months ago