Fully automated generation of UCSC assembly hubs
☆35Oct 2, 2024Updated last year
Alternatives and similar repositories for MakeHub
Users that are interested in MakeHub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generating UTRs from SHort Reads☆11Sep 28, 2020Updated 5 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated last week
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- UCSC Genome Browser Docker Image☆17May 12, 2022Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 5 months ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Updated this week
- ☆12Apr 9, 2018Updated 8 years ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated last year
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 3 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 7 months ago
- A dotplot generator for large chromosomes☆42Oct 3, 2023Updated 2 years ago
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 4 months ago
- ☆17Mar 2, 2024Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Generates an NCBI .tbl file of annotations on a genome.☆68Mar 5, 2018Updated 8 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆160Jul 6, 2025Updated 9 months ago
- ☆22Mar 12, 2026Updated last month
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Contig Ploidy and Allele Dosage Estimation☆11Oct 30, 2015Updated 10 years ago
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- End-guided RNA assembler☆15Dec 2, 2025Updated 4 months ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆28Apr 11, 2025Updated last year
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16May 2, 2020Updated 5 years ago
- ☆32Jul 20, 2018Updated 7 years ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- Just Annotate My Genome☆19Sep 17, 2024Updated last year