Gaius-Augustus / MakeHub
Fully automated generation of UCSC assembly hubs
☆34Updated 3 months ago
Alternatives and similar repositories for MakeHub:
Users that are interested in MakeHub are comparing it to the libraries listed below
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- for visual evaluation of read support for structural variation☆51Updated 7 months ago
- python plotly Circos from VCF☆31Updated 6 months ago
- Evolutionary Transcriptomics with R☆41Updated this week
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Filter SAM file for soft and hard clipped alignments☆46Updated 7 months ago
- Maximum likelihood demultiplexing☆46Updated last year
- Simple pileup-based variant caller☆85Updated 9 months ago
- Algorithm to detect germline and de novo transposon insertions☆26Updated 9 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- ☆61Updated last week
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆22Updated 2 years ago
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- new repo☆27Updated 3 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year