sing-group / ALTERLinks
ALignment Transformation EnviRonment
☆11Updated 7 years ago
Alternatives and similar repositories for ALTER
Users that are interested in ALTER are comparing it to the libraries listed below
Sorting:
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 7 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆13Updated 2 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- An R package to infer and analyze synteny networks from protein sequences☆34Updated 3 months ago
- ☆25Updated 9 years ago
- ☆28Updated 3 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 11 months ago
- A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data☆30Updated 4 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆23Updated 5 years ago
- Genome Annotation Pipeline☆39Updated last year
- ☆26Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Updated 2 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- ☆33Updated 4 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 5 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.☆13Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- ☆21Updated 6 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 11 months ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆35Updated 8 years ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated last month