ALignment Transformation EnviRonment
☆12May 8, 2018Updated 8 years ago
Alternatives and similar repositories for ALTER
Users that are interested in ALTER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 8 years ago
- SplitsTree4 phylogenetic network tool☆12Sep 21, 2023Updated 3 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 9 years ago
- trans-species prediction of TFBS in plants☆14Apr 26, 2021Updated 5 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆20May 13, 2021Updated 5 years ago
- do multiple nucleotide sequence alignment fast and accurately☆18Dec 1, 2022Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- Fast, accurate species tree estimation.☆13Aug 17, 2026Updated 2 months ago
- Quartet-based estimation of species trees, trees of blobs, and level-1 networks☆16Sep 22, 2026Updated last month
- ☆26Aug 15, 2025Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆47Sep 27, 2026Updated last month
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆18Oct 6, 2025Updated last year
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆18Jun 2, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆12Aug 25, 2024Updated 2 years ago
- Data and scripts for amplicon pipeline☆27Mar 10, 2019Updated 7 years ago
- Documentation for Evolview☆29Nov 27, 2021Updated 4 years ago
- Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and…☆15Updated this week
- R scripts used for MYC analyses☆10Jan 30, 2018Updated 8 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- STAG: Species Tree from All Genes☆37Dec 10, 2018Updated 7 years ago
- Automatically exported from code.google.com/p/prottest3☆39Jan 22, 2018Updated 8 years ago
- Wasabi is a web-based tool for evolutionary sequence analysis. Homepage: http://wasabiapp.org☆17Oct 1, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- Scoring alignments by embedding vector similarity☆15Jul 17, 2026Updated 3 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 4 months ago
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- Setup your win-only applications on linux☆12May 31, 2020Updated 6 years ago
- ☆12Jan 29, 2020Updated 6 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 3 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆24Sep 24, 2015Updated 11 years ago
- ☆11Aug 2, 2024Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Simulate short-reads datasets using probabilistic models☆12Jun 1, 2013Updated 13 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆254Sep 29, 2026Updated last month
- phylogenetic networks using ggplot2 and ggtree☆13Dec 24, 2024Updated last year
- The SING Java Framework for Scientific Apps☆13Jul 17, 2018Updated 8 years ago