sing-group / ALTERLinks
ALignment Transformation EnviRonment
☆11Updated 7 years ago
Alternatives and similar repositories for ALTER
Users that are interested in ALTER are comparing it to the libraries listed below
Sorting:
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 7 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Updated 2 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- ☆29Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 6 months ago
- ☆26Updated 4 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Updated 8 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆25Updated 2 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆44Updated 2 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated 2 weeks ago
- ☆35Updated 5 years ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- ☆25Updated 9 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆52Updated last month
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last month
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 4 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆23Updated 5 years ago