Alternatives and similar repositories for hclust2

Users that are interested in hclust2 are comparing it to the libraries listed below

• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated last year
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆32Updated 2 years ago
• andreasmock / MetaboDiff
  ☆31Updated 4 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆61Updated last year
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 2 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated 5 months ago
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• sgivan / gb2ptt
  Convert a Genbank flat file to an NCBI ptt file
  ☆17Updated 2 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 8 months ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆17Updated 2 weeks ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 6 months ago
• BenBeresfordJones / MGBC
  The Mouse Gastrointestinal Bacteria Catalogue
  ☆16Updated 3 years ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆41Updated 5 months ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆29Updated last year
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• IOB-Muenster / nanopipe2
  The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…
  ☆18Updated 6 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆34Updated 2 months ago
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆30Updated 7 months ago
• niemasd / ViralMSA
  Reference-guided multiple sequence alignment of viral genomes
  ☆71Updated 2 months ago
• dstreett / FLASH2
  Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…
  ☆50Updated 7 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 4 months ago
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆65Updated last month
• Gabaldonlab / EvolClust
  Evolcust retrieves groups of genes that appear clustered together in groups of species
  ☆16Updated 2 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated last year
• cgat-developers / cgat-apps
  cgat-apps repository
  ☆34Updated 4 months ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆18Updated 7 years ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆44Updated 2 years ago