Alternatives and similar repositories for hclust2

Users that are interested in hclust2 are comparing it to the libraries listed below

• andreasmock / MetaboDiff
  ☆33Updated 5 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated 2 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆42Updated this week
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆36Updated 3 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆57Updated 3 months ago
• sgivan / gb2ptt
  Convert a Genbank flat file to an NCBI ptt file
  ☆17Updated 2 years ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆45Updated 3 years ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆25Updated this week
• gamcil / clustermap.js
  ☆31Updated 4 years ago
• biocore / qurro
  Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples
  ☆34Updated 9 months ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆88Updated 3 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated 2 months ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆57Updated last month
• IOB-Muenster / nanopipe2
  The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…
  ☆18Updated 7 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 10 months ago
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• bhattlab / SmORFinder
  A command line tool to identify and annotate small proteins in microbial sequencing datasets.
  ☆25Updated 2 years ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆43Updated 9 months ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated last month
• HUST-NingKang-Lab / MGM
  MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.
  ☆41Updated 9 months ago
• CalabreseLab / seekr
  A library for counting small kmer frequencies in nucleotide sequences.
  ☆27Updated last year
• Juke34 / awesome-awesomeness-bioinformatics
  A list of awesome awesomeness related to bioinformatics and associated fields
  ☆42Updated 9 months ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated 2 months ago
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆30Updated last year
• NBISweden / nbis-meta
  A snakemake workflow for metagenomic projects
  ☆15Updated 2 years ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago