Alternatives and similar repositories for hclust2

Users that are interested in hclust2 are comparing it to the libraries listed below

• andreasmock / MetaboDiff
  ☆33Updated 5 years ago
• leylabmpi / endoR
  Code and manual of the endoR R-package (Ruaud et al, in preparation).
  ☆12Updated 2 years ago
• datapplab / pathview
  pathway based data integration and visualization
  ☆42Updated 8 months ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆17Updated 4 months ago
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated 2 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 2 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated last month
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated 2 years ago
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆50Updated this week
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 2 weeks ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 3 years ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated 9 months ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated last week
• apcamargo / tspex
  tspex: tissue-specificity calculator
  ☆36Updated 2 years ago
• cgat-developers / cgat-apps
  cgat-apps repository
  ☆34Updated 8 months ago
• raeslab / GMMs
  A manually curated database of human gut metabolic modules.
  ☆17Updated 7 years ago
• NBISweden / nbis-meta
  A snakemake workflow for metagenomic projects
  ☆15Updated 2 years ago
• montilab / nf-gwas-pipeline
  A Nextflow Genome-Wide Association Study (GWAS) Pipeline
  ☆35Updated 5 months ago
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆28Updated last year
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated last month
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 7 years ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• CalabreseLab / seekr
  A library for counting small kmer frequencies in nucleotide sequences.
  ☆28Updated last year
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆45Updated 3 years ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆21Updated 8 years ago
• BenBeresfordJones / MGBC
  The Mouse Gastrointestinal Bacteria Catalogue
  ☆15Updated 3 years ago