bioinf-mcb / Metagenomic-DeepFRILinks
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
☆40Updated 3 months ago
Alternatives and similar repositories for Metagenomic-DeepFRI
Users that are interested in Metagenomic-DeepFRI are comparing it to the libraries listed below
Sorting:
- DeepECtransformer☆28Updated last year
- ☆71Updated 11 months ago
- Genomic language model predicts protein co-regulation and function☆81Updated 6 months ago
- Fast protein domain structure embedding+search tool☆26Updated 3 months ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Transmembrane proteins predicted through Language Model embeddings☆39Updated last month
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆54Updated 4 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- Detection of remote homology by comparison of protein language model representations☆55Updated 9 months ago
- Protein structure alignment and search algorithm☆70Updated this week
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆58Updated 4 years ago
- ☆44Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year
- ☆28Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆30Updated last year
- Neural Networks for Protein Sequence Alignment☆125Updated 10 months ago
- Diverse Genomic Embedding Benchmark☆47Updated 2 weeks ago
- Multi-class signal peptide prediction and structure decoding model.☆94Updated 7 months ago
- ☆30Updated last year
- ☆11Updated 9 months ago
- Virus Protein Structural Analysis Toolkit☆12Updated last year
- Fast protein structure searching or your money back☆112Updated 5 months ago
- Code for LazyAF pipeline☆20Updated last year
- Protein Sequence Annotation with Language Models☆23Updated 3 months ago
- ☆43Updated 11 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆70Updated 3 weeks ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated last week
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆33Updated last month
- ☆17Updated 3 years ago