Alternatives and similar repositories for Metagenomic-DeepFRI

Users that are interested in Metagenomic-DeepFRI are comparing it to the libraries listed below

• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆24Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆53Updated 5 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆20Updated last week
• clairemcwhite / vcmsa
  ☆30Updated last year
• JudeWells / chainsaw
  ☆38Updated 7 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated 11 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆36Updated last year
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆38Updated 10 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆36Updated this week
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆37Updated 2 weeks ago
• TattaBio / gLM2
  ☆63Updated 7 months ago
• tymor22 / tm-vec
  ☆68Updated 7 months ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆19Updated last year
• seanrjohnson / esmologs
  Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.
  ☆14Updated 4 months ago
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆45Updated last month
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆26Updated last year
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆20Updated 6 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• SNU-CSSB / RF2-Lite
  ☆28Updated 11 months ago
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆22Updated this week
• UCLOrengoGroup / cath-alphaflow
  ☆20Updated last week
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆77Updated last month
• Doudna-lab / GARNET_DL
  ☆36Updated 4 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆84Updated 3 months ago
• Merck / bgc-pipeline
  ☆11Updated 5 months ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆42Updated 3 years ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆53Updated 2 months ago
• cansyl / ECPred
  ☆16Updated 3 years ago
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆10Updated 3 years ago