xonq / mycotoolsLinks
Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparative genomics.
☆17Updated 5 months ago
Alternatives and similar repositories for mycotools
Users that are interested in mycotools are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 2 months ago
- Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.☆34Updated 3 months ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 2 months ago
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆28Updated 4 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- UFCG: Universal Fungal Core Genes☆34Updated 6 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆39Updated 2 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated last month
- Phyling: phylogenetic inference from annotated genomes☆29Updated last month
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Updated 2 weeks ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 6 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆15Updated last month
- Learning and Aligning Large Protein Families with support of protein language models.☆30Updated this week
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Updated 7 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated 2 months ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 6 months ago
- ☆17Updated 2 years ago
- ☆31Updated this week
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆61Updated last year
- ☆22Updated 2 years ago
- Run_dbcan V5☆40Updated this week
- GO KEGG annotation☆39Updated 3 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆52Updated last month
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 4 years ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 7 years ago