xonq / mycotools
Mycotools is a compilation of computational biology tools and database (MycotoolsDB/MTDB) software that facilitate large-scale comparative genomics.
☆13Updated 2 weeks ago
Alternatives and similar repositories for mycotools:
Users that are interested in mycotools are comparing it to the libraries listed below
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated 2 weeks ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated last month
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated this week
- Bacterial GWAS analysis☆39Updated last week
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 8 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- Automatic evaluation of HGTs☆28Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated this week
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 4 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated 3 weeks ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- IslandPath standalone software☆31Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated 2 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆27Updated 5 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- ☆22Updated 11 years ago
- Tiberius is a deep learning gene finder.☆52Updated this week
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ContScout sequence contamination filter tool☆20Updated 3 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆35Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆41Updated 2 weeks ago