Alternatives and similar repositories for mycotools

Users that are interested in mycotools are comparing it to the libraries listed below

• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 2 months ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆46Updated 7 months ago
• plantismash / plantismash
  Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.
  ☆33Updated 2 weeks ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆23Updated this week
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆47Updated 2 years ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆49Updated 10 months ago
• BenoitMorel / AleRax
  Gene tree - species tree reconciliation from gene tree distributions
  ☆35Updated 2 weeks ago
• stajichlab / Phyling
  Phyling: phylogenetic inference from annotated genomes
  ☆27Updated 2 weeks ago
• RogerLab / Eukfinder
  Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
  ☆27Updated 6 months ago
• marbl / binnacle
  Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
  ☆15Updated 3 years ago
• Rowena-h / BUSCOfilter
  A tool to filter BUSCO output into single-copy gene files for phylogenomics
  ☆13Updated last year
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆38Updated last month
• simonwhelan / Divvier
  A program for divvying or partially filtering multiple sequence alignments
  ☆27Updated 6 years ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆39Updated 3 years ago
• refresh-bio / vclust
  Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
  ☆92Updated 5 months ago
• iqtree / iqtree3
  IQ-TREE version 3: software for phylogenetics
  ☆82Updated this week
• PalMuc / TransPi
  TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
  ☆28Updated 3 years ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆81Updated last month
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆64Updated 2 weeks ago
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆36Updated last year
• steineggerlab / ufcg
  UFCG: Universal Fungal Core Genes
  ☆34Updated 3 months ago
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆24Updated 2 weeks ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• iquasere / KEGGCharter
  A tool for representing genomic potential and transcriptomic expression into KEGG pathways
  ☆59Updated last year
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 3 months ago
• EBI-Metagenomics / mettannotator
  ☆79Updated this week
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆27Updated 2 years ago
• gene2dis / BugBuster
  Repository for general metagenomics Nextflow pipeline
  ☆23Updated last month
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆50Updated 2 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆83Updated 3 weeks ago