Alternatives and similar repositories for bgc-pipeline

Users that are interested in bgc-pipeline are comparing it to the libraries listed below

• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆60Updated 5 years ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated 2 years ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆41Updated 3 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆96Updated 9 months ago
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated last month
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆91Updated 3 weeks ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• tlawrence3 / amPEPpy
  ☆29Updated last year
• HUST-NingKang-Lab / BGC-Prophet
  A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …
  ☆18Updated 2 weeks ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆83Updated 7 months ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆160Updated 11 months ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆73Updated this week
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆40Updated last week
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated last month
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆155Updated 2 years ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆30Updated 3 months ago
• cansyl / ECPred
  ☆17Updated 3 years ago
• jafetgado / PyCanal
  Conservation analysis of homologous proteins with Python
  ☆12Updated 4 years ago
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆52Updated 7 months ago
• MicroResearchLab / AMP-potency-prediction-EvoGradient
  A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…
  ☆38Updated 3 months ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆56Updated 11 months ago
• jnoms / vpSAT
  Virus Protein Structural Analysis Toolkit
  ☆14Updated last year
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆74Updated 2 months ago
• amaurypm / pseqsid
  Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
  ☆18Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆76Updated 3 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆196Updated last month
• maovshao / PLMAlign
  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
  ☆20Updated 2 months ago