Merck / bgc-pipelineLinks
☆12Updated 10 months ago
Alternatives and similar repositories for bgc-pipeline
Users that are interested in bgc-pipeline are comparing it to the libraries listed below
Sorting:
- DeepECtransformer☆28Updated 2 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆60Updated 5 years ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- UniProt Id Mapping through API☆35Updated last month
- Transmembrane proteins predicted through Language Model embeddings☆39Updated 2 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆96Updated 8 months ago
- snakemake pipeline for creating trees from sequence sets☆91Updated this week
- Fast protein domain structure embedding+search tool☆26Updated last month
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆16Updated 5 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆156Updated 10 months ago
- ☆29Updated last year
- Genomic language model predicts protein co-regulation and function☆81Updated 7 months ago
- Conservation analysis of homologous proteins with Python☆12Updated 4 years ago
- Protein structure alignment and search algorithm☆73Updated last week
- Software for predicting translation initiation rates in bacteria☆29Updated 2 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- Detection of remote homology by comparison of protein language model representations☆56Updated 10 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated 3 weeks ago
- Attentive deep learning model for antimicrobial peptide prediction☆50Updated 7 months ago
- A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…☆37Updated 2 months ago
- BGC Detection and Classification Using Deep Learning☆155Updated last year
- A domain parser for Alphafold models☆41Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆74Updated last month
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Virus Protein Structural Analysis Toolkit☆14Updated last year
- Protein Sequence Annotation with Language Models☆24Updated 4 months ago
- ☆17Updated 3 years ago
- ☆14Updated 9 years ago
- A pipeline to build similarity maps of protein space☆39Updated last week