Merck / bgc-pipelineLinks
☆11Updated 9 months ago
Alternatives and similar repositories for bgc-pipeline
Users that are interested in bgc-pipeline are comparing it to the libraries listed below
Sorting:
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆61Updated 5 years ago
- DeepECtransformer☆28Updated last year
- UniProt Id Mapping through API☆35Updated 2 weeks ago
- BGC Detection and Classification Using Deep Learning☆153Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆95Updated 8 months ago
- snakemake pipeline for creating trees from sequence sets☆86Updated 2 weeks ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Feature map and function annotation of Proteins☆33Updated last year
- Protein structure alignment and search algorithm☆72Updated last week
- ☆28Updated last year
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆153Updated 10 months ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆15Updated 4 months ago
- Transmembrane proteins predicted through Language Model embeddings☆39Updated 2 months ago
- Fast protein domain structure embedding+search tool☆25Updated 2 weeks ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated 3 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 weeks ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆17Updated last year
- Software for predicting translation initiation rates in bacteria☆29Updated 2 months ago
- Conservation analysis of homologous proteins with Python☆12Updated 4 years ago
- Genomic language model predicts protein co-regulation and function☆81Updated 6 months ago
- Attentive deep learning model for antimicrobial peptide prediction☆52Updated 6 months ago
- ☆17Updated 3 years ago
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆15Updated 2 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆85Updated last month
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆120Updated last year
- Virus Protein Structural Analysis Toolkit☆12Updated last year
- kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases d…☆18Updated 6 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated this week
- ☆14Updated 9 years ago
- Discovery of conserved gene clusters in multiple genomes☆97Updated 4 months ago