A Port of SparCC by Yonatan Friedman to Python3
☆17Feb 14, 2020Updated 6 years ago
Alternatives and similar repositories for SparCC3
Users that are interested in SparCC3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 8 years ago
- ☆20Jan 12, 2017Updated 9 years ago
- download isfinder database☆13Nov 9, 2018Updated 7 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated 3 months ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆35Oct 26, 2020Updated 5 years ago
- ☆32Jun 12, 2023Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆98May 12, 2024Updated last year
- ☆20Aug 10, 2022Updated 3 years ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆32Feb 23, 2018Updated 8 years ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆34Jun 18, 2023Updated 2 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 7 months ago
- Code and analysis results for the CRC shotgun meta-analysis☆39Sep 28, 2022Updated 3 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- ☆13Feb 22, 2024Updated 2 years ago
- ☆27Sep 23, 2025Updated 6 months ago
- ☆64Feb 27, 2024Updated 2 years ago
- Examples to get started with IBM Functional Genomics Platform☆15Sep 17, 2025Updated 7 months ago
- Predict AMPs in (meta)genomes and peptides☆91Nov 24, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Nov 9, 2022Updated 3 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Oct 3, 2024Updated last year
- From metagenomes to epitopes and beyond☆12Mar 30, 2026Updated 2 weeks ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆11Jul 13, 2020Updated 5 years ago
- ☆13Jan 26, 2025Updated last year
- Client-side REST access to KEGG☆15Apr 9, 2026Updated last week
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- Ready-made Taxonomic Weights Repository☆26Mar 31, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 3 years ago
- iMeta teaches you to plot☆56Apr 26, 2023Updated 2 years ago
- RNA dependent RNA Polymerase Palmprint Analysis☆12Aug 1, 2024Updated last year
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 3 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆409Mar 26, 2026Updated 3 weeks ago
- Bioinformatics program inStrain☆184Mar 12, 2026Updated last month