Alternatives and similar repositories for SparCC3

Users that are interested in SparCC3 are comparing it to the libraries listed below

• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• ziyewang / MetaBinner
  ☆59Updated last year
• giannamars / DEBmicroTrait.jl
  ☆14Updated 11 months ago
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆72Updated 2 years ago
• tpellegrinetti / PGPg_finder
  PGPg Finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …
  ☆26Updated 5 months ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆66Updated 3 years ago
• clb21565 / mobileOG-db
  code repo for mobileOG-db
  ☆41Updated 5 months ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆22Updated 2 years ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆63Updated 2 years ago
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆55Updated 6 months ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆79Updated 2 months ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆87Updated last year
• hoelzer / pocp
  Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.
  ☆27Updated 6 months ago
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆72Updated 4 years ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆46Updated 2 years ago
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆81Updated 10 months ago
• Microbial-Ecology-Group / AMRplusplus
  AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…
  ☆43Updated last month
• hzi-bifo / traitar
  From genomes to phenotypes: Traitar, the microbial trait analyzer
  ☆61Updated 6 years ago
• wwood / galah
  More scalable dereplication for metagenome assembled genomes
  ☆71Updated this week
• christophertbrown / iRep
  scripts for estimating bacteria replication rates based on population genome copy number variation
  ☆72Updated 5 years ago
• HubertTang / PLASMe
  ☆30Updated last year
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 3 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆85Updated 2 years ago
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆51Updated 4 years ago
• linsalrob / PhiSpy
  Prediction of prophages from bacterial genomes
  ☆81Updated 4 months ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆73Updated 6 months ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆43Updated 2 years ago
• allind / EukDetect
  ☆54Updated 4 months ago
• Arkadiy-Garber / FeGenie
  HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
  ☆62Updated 3 years ago
• leylabmpi / Struo
  Ley Lab MetaGenome Profiler DataBase generator
  ☆49Updated 3 years ago