JCSzamosi / SparCC3
A Port of SparCC by Yonatan Friedman to Python3
☆14Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for SparCC3
- ☆48Updated 8 months ago
- ☆30Updated last year
- Binning Virus Genomes from Metagenomes☆58Updated 2 years ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- ☆45Updated 7 months ago
- ☆27Updated 10 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆56Updated 5 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆31Updated 4 years ago
- ☆25Updated 7 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆22Updated 3 weeks ago
- Sparse Cooccurence Network Investigation for Compositional data☆23Updated 3 weeks ago
- GTDB taxonomy taxdump files with trackable TaxIds☆49Updated 6 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆10Updated 2 weeks ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆61Updated 3 months ago
- ☆47Updated 3 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆39Updated 3 years ago
- Batch effects removal for microbiome data via conditional quantile regression☆26Updated 2 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆38Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 7 months ago
- Prediction of prophages from bacterial genomes☆71Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆45Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- ☆79Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆68Updated 4 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago