zachcp / bioinformaticstoolkitLinks
Build and deploy cross platform bioinformatic utilities with Rust.
☆19Updated 9 months ago
Alternatives and similar repositories for bioinformaticstoolkit
Users that are interested in bioinformaticstoolkit are comparing it to the libraries listed below
Sorting:
- Efficient querying of biological databases☆42Updated 2 months ago
- ziglang + htslib☆20Updated 4 years ago
- Fast interval intersection library☆44Updated 4 months ago
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆49Updated 2 weeks ago
- Rust implmentation of VCF parser☆25Updated 3 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- PCA in rust☆16Updated 2 years ago
- Alignment-based gene expression quantification☆31Updated 4 months ago
- A high efficiency binary format for sequencing data☆84Updated 2 weeks ago
- Convert vcf in parquet☆27Updated 11 months ago
- Bioinformatics Algorithms implemented in Rust for Learners☆31Updated 4 years ago
- A library of common biomedical types.☆40Updated 8 months ago
- Command line utility for working with next-generation sequencing files.☆37Updated 6 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆39Updated 2 weeks ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- Bit-packed and well-typed biological sequences☆37Updated last month
- bioinformatics toolkit in rust☆93Updated 3 months ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆21Updated 8 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated last month
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Updated 2 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆24Updated last year
- quickly filter fastq files by matching sequences to a set of regex patterns☆57Updated 2 weeks ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆61Updated 3 weeks ago
- A better, faster way to count guides in CRISPR screens.☆34Updated 8 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Updated 11 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated 11 months ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆24Updated 4 months ago
- A FASTA/FASTQ format parser library☆20Updated last year