zachcp / bioinformaticstoolkitLinks
Build and deploy cross platform bioinformatic utilities with Rust.
☆19Updated 6 months ago
Alternatives and similar repositories for bioinformaticstoolkit
Users that are interested in bioinformaticstoolkit are comparing it to the libraries listed below
Sorting:
- Efficient querying of biological databases☆42Updated 2 weeks ago
- Command line utility for working with next-generation sequencing files.☆36Updated 3 months ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 6 months ago
- Fast interval intersection library☆43Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆31Updated last week
- Alignment-based gene expression quantification☆28Updated last month
- Rust implmentation of VCF parser☆25Updated 3 years ago
- Single-Cell RNA-seq pseudo-aligner☆51Updated last year
- ziglang + htslib☆20Updated 3 years ago
- Bit-packed and well-typed biological sequences☆37Updated last week
- Convert vcf in parquet☆27Updated 8 months ago
- Bioinformatics Algorithms implemented in Rust for Learners☆31Updated 4 years ago
- A high efficiency binary format for sequencing data☆75Updated last week
- An ultrafast and memory efficient tool for phylogenomics☆26Updated 2 months ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆21Updated 5 months ago
- Hardware Accelerated Read Until☆16Updated last week
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- A library of common biomedical types.☆39Updated 5 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- PCA in rust☆15Updated 2 years ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆56Updated last month
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 8 months ago
- A command line utilty for working with BINSEQ files☆24Updated this week
- Analyzes whole genome sequencing data for gene-editing verification☆10Updated 6 months ago
- bioinformatics toolkit in rust☆92Updated 2 weeks ago
- A Similarity-Guided Alignment Algorithm☆27Updated 4 months ago
- 🧬 Efficient parallelized peta-scale protein database search☆40Updated last year
- gia: Genomic Interval Arithmetic☆64Updated last year
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated last month
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year