Build and deploy cross platform bioinformatic utilities with Rust.
☆19Apr 1, 2025Updated last year
Alternatives and similar repositories for bioinformaticstoolkit
Users that are interested in bioinformaticstoolkit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An ultrafast and memory efficient tool for phylogenomics☆27Updated this week
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆20Feb 25, 2026Updated 8 months ago
- ☆10Sep 29, 2020Updated 6 years ago
- Illumina read substitution and indel error corrector. Processes human WGS 45x depth reads in about 4 hours, resulting in the reads qualit…☆10Sep 17, 2026Updated last month
- A CLI for pairwise alignment of sequences, using both normal and mass based alignment.☆17Aug 19, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A library for efficient nucleotide sequence manipulation using 2-bit encoding☆12Sep 28, 2026Updated last month
- protein utilities in Rust☆33Updated this week
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 5 years ago
- Tearing through FASTA/Q sequences☆46Oct 29, 2026Updated last week
- Ms2 basEd saMple vectOrization (memo) package☆17Jun 13, 2023Updated 3 years ago
- Build phylogenomic datasets in seconds☆15Oct 28, 2026Updated last week
- Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.☆11Mar 25, 2026Updated 7 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- ☆19Mar 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆26Nov 9, 2022Updated 3 years ago
- WikiPathways Database☆19Updated this week
- Nail is an Alignment Inference tooL☆71Updated this week
- All UCSC Genome Browser source code that is under an open source license, mostly file format converters, command line tools and C librari…☆14Dec 15, 2025Updated 10 months ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 3 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Fasten toolkit, for streaming operations on fastq files☆85Oct 12, 2026Updated 3 weeks ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆33Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rust data structures and client for the PubChem REST API☆14Mar 20, 2023Updated 3 years ago
- A decoder that automatically detects compression format (gzip, bzip2, xz, zstd) via external crates. Includes encoder as well.☆13Jan 8, 2026Updated 9 months ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆16Jun 17, 2026Updated 4 months ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 5 years ago
- Rust crate to deal with phylogenetic trees☆14Updated this week
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- A small and fast FM-Index for Rust☆44Feb 1, 2026Updated 9 months ago
- Independent evaluation set construction for trustworthy ML models in biochemistry☆15Oct 28, 2026Updated last week
- cool BED-to-GFF3 converter that runs in parallel☆10Apr 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Predictive Algorithm for Resolving A-domain Specificity by featurising Enzyme and Compound in Tandem☆14Oct 15, 2026Updated 3 weeks ago
- Analysis and benchmarking of mass spectra similarity measures using gnps data set.☆24Aug 13, 2021Updated 5 years ago
- Mechanical Turk on your own machine for chemical literature annotation☆13Feb 17, 2022Updated 4 years ago
- Repository to track changes in MIBiG curation data stored in JSON format☆11Mar 18, 2024Updated 2 years ago
- Better Alignments with Translated HMMER☆28Updated this week
- A package to cluster and visualise MS/MS spectral data☆11Feb 26, 2021Updated 5 years ago
- Rust bindings to minimap2 library☆114Updated this week