A tool for drawing ANI clustermap between all-vs-all microbial genomes
☆95May 3, 2025Updated last year
Alternatives and similar repositories for ANIclustermap
Users that are interested in ANIclustermap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆85May 3, 2025Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 3 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆68Jan 19, 2026Updated 8 months ago
- A genome visualization python package for comparative genomics☆424Jun 14, 2026Updated 3 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆78Aug 21, 2025Updated last year
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆265Updated this week
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆208Jun 10, 2026Updated 4 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆116Dec 5, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆683Updated this week
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆67Sep 14, 2024Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Updated this week
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆112Jun 2, 2026Updated 4 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆91Sep 9, 2026Updated last month
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆234Sep 17, 2026Updated 3 weeks ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- whole genome MLST analysis☆57Jun 17, 2026Updated 3 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆158Sep 2, 2026Updated last month
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Find clustered hits from a BLAST search☆150Aug 6, 2026Updated 2 months ago
- An updated pipeline for pangenome investigation☆375Jul 2, 2026Updated 3 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆51Sep 4, 2026Updated last month
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- Build a partitioned pangenome graph from microbial genomes☆312Updated this week
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆81Sep 20, 2023Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆67Jun 16, 2025Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆26Jul 10, 2026Updated 3 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Aug 21, 2026Updated last month
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆15Feb 10, 2022Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆240Oct 2, 2026Updated last week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆37Jul 21, 2025Updated last year