A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
☆84May 3, 2025Updated 11 months ago
Alternatives and similar repositories for COGclassifier
Users that are interested in COGclassifier are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆92May 3, 2025Updated 11 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆66Sep 14, 2024Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆107Dec 5, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆104Jun 25, 2023Updated 2 years ago
- A genome visualization python package for comparative genomics☆398Dec 6, 2025Updated 4 months ago
- Find clustered hits from a BLAST search☆137Jan 16, 2026Updated 3 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 3 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆65Jan 19, 2026Updated 3 months ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆633Feb 18, 2026Updated 2 months ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 8 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Apr 10, 2026Updated 2 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 3 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Apr 20, 2023Updated 3 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆216Aug 27, 2025Updated 8 months ago
- ☆51Apr 17, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 3 years ago
- An R package designed for drawing gene arrow maps☆98Sep 29, 2025Updated 7 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆63Mar 3, 2026Updated last month
- Combining de novo and reference-guided assembly with Scaffold_builder☆20Oct 8, 2021Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆342Sep 11, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Making whole bacterial genome sequencing data analysis easy☆113Apr 22, 2025Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆359Mar 29, 2026Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆45Aug 20, 2025Updated 8 months ago
- fast phage annotation program☆204Apr 21, 2026Updated last week
- Calculate assocations between genes and traits☆31Mar 10, 2025Updated last year