moshi4 / COGclassifier
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
☆52Updated this week
Related projects: ⓘ
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆66Updated this week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆77Updated last year
- Reorients assembled microbial sequences☆95Updated this week
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆47Updated last week
- IS mapping software☆50Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆94Updated this week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆60Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆136Updated 2 weeks ago
- Binning Virus Genomes from Metagenomes☆55Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆50Updated 3 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆55Updated last year
- A toolbox for comparative genomics.☆94Updated 3 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆79Updated 10 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆71Updated 11 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆49Updated 4 months ago
- ☆78Updated last year
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆23Updated 11 months ago
- ☆31Updated 2 weeks ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆57Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆54Updated 11 months ago
- CLI tool to annotate genes with KOfam☆69Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 3 months ago
- ☆65Updated 8 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆59Updated 9 months ago
- a collection of scripts for organising bacterial genomes by species☆75Updated 2 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆37Updated 3 years ago
- Metagenomic classification of long-read sequencing data☆55Updated this week
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆42Updated 5 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆56Updated 3 years ago
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆19Updated last month