moshi4 / COGclassifierLinks
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
☆66Updated last month
Alternatives and similar repositories for COGclassifier
Users that are interested in COGclassifier are comparing it to the libraries listed below
Sorting:
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆81Updated last month
- Reorients assembled microbial sequences☆120Updated 2 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated last month
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆64Updated 2 weeks ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 9 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 3 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆68Updated 4 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆46Updated 2 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 11 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆43Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆127Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆137Updated this week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆72Updated 5 months ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- ARG normalization by mapping to the ARO ontology.☆57Updated last month
- A toolbox for comparative genomics.☆103Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 3 weeks ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 9 months ago
- Find endogenous viral elements in genomes☆13Updated 4 months ago
- ☆47Updated 3 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆58Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 9 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- IS mapping software☆54Updated 3 years ago
- ☆71Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago