KamilSJaron / k-mer-approaches-for-biodiversity-genomicsLinks
k-mer learning materials
☆80Updated 7 months ago
Alternatives and similar repositories for k-mer-approaches-for-biodiversity-genomics
Users that are interested in k-mer-approaches-for-biodiversity-genomics are comparing it to the libraries listed below
Sorting:
- Synteny Imager☆64Updated 2 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆44Updated 2 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Simple pileup-based variant caller☆92Updated 5 months ago
- A local-haplotagging-based small and structural variant caller☆85Updated this week
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- ☆66Updated last month
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆112Updated 2 months ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- Pipeline to convert a haploid assembly into diploid☆103Updated 8 months ago
- Tiberius is a deep learning gene finder.☆77Updated last week
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated this week
- Show pangenome graphs in an easy way☆56Updated 2 months ago
- Call select base modifications in PacBio HiFi reads☆13Updated 8 months ago
- A list of software for pangenomics☆131Updated 2 weeks ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆113Updated last week
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆26Updated 5 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆58Updated 3 weeks ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated 10 months ago
- ☆44Updated 8 years ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆78Updated last year
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Scripting analyses of genomes in Ensembl Plants☆40Updated 3 weeks ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆73Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago