KamilSJaron / k-mer-approaches-for-biodiversity-genomicsLinks
k-mer learning materials
☆80Updated 9 months ago
Alternatives and similar repositories for k-mer-approaches-for-biodiversity-genomics
Users that are interested in k-mer-approaches-for-biodiversity-genomics are comparing it to the libraries listed below
Sorting:
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆47Updated 5 months ago
- ☆68Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 3 weeks ago
- Synteny Imager☆65Updated last month
- A local-haplotagging-based small and structural variant caller☆89Updated 2 weeks ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆115Updated 2 weeks ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 10 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Simple pileup-based variant caller☆94Updated 7 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆124Updated 3 weeks ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated last year
- Show pangenome graphs in an easy way☆56Updated 4 months ago
- ☆45Updated 9 years ago
- Pipeline to convert a haploid assembly into diploid☆108Updated 10 months ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- Call select base modifications in PacBio HiFi reads☆15Updated 3 weeks ago
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Updated 5 years ago
- PacBio BAM toolkit☆48Updated 9 months ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Tiberius is a deep learning gene finder.☆82Updated last week
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆88Updated last year
- Assembly statistic visualisation☆91Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆85Updated this week
- A organelle de novo genome assembly toolkit☆70Updated 9 months ago