Alternatives and similar repositories for k-mer-approaches-for-biodiversity-genomics

Users that are interested in k-mer-approaches-for-biodiversity-genomics are comparing it to the libraries listed below

• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆43Updated 3 weeks ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 8 months ago
• kjenike / panagram
  ☆63Updated 2 weeks ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• rhysf / Synima
  Synteny Imager
  ☆63Updated 2 weeks ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆41Updated 6 months ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆103Updated 3 weeks ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆48Updated 11 months ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆78Updated last week
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆57Updated 4 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆10Updated 6 months ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated last week
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• bcgsc / LongStitch
  🪡Correct and scaffold assemblies using long reads
  ☆56Updated last year
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆60Updated 7 years ago
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆71Updated 4 months ago
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆50Updated 4 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆102Updated 6 months ago
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆45Updated 8 months ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆32Updated last year
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆37Updated 2 weeks ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆79Updated 3 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆108Updated 3 weeks ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆87Updated 2 weeks ago
• kensung-lab / hypo
  HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
  ☆64Updated 5 years ago
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year