Alternatives and similar repositories for FlyPN

Users that are interested in FlyPN are comparing it to the libraries listed below

• velocyto-team / velocyto-notebooks
  ☆55Updated 7 years ago
• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆39Updated 5 months ago
• HYsxe / PRINT
  ☆35Updated 9 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆52Updated 3 weeks ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆32Updated last month
• maggiecrow / MetaNeighbor
  ☆49Updated 7 years ago
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆37Updated 2 months ago
• AllonKleinLab / SPRING_dev
  ☆69Updated last year
• JonathanShor / DoubletDetection
  Doublet detection in single-cell RNA-seq data.
  ☆91Updated 4 months ago
• linnarsson-lab / developing-human-brain
  ☆32Updated 10 months ago
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆50Updated last year
• cejuliano / hydra_single_cell
  ☆12Updated 5 years ago
• linnarsson-lab / awesome-single-cell
  List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
  ☆14Updated 8 years ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆32Updated last year
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆76Updated last month
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆62Updated last month
• AllonKleinLab / SPRING
  ☆68Updated 7 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆62Updated last year
• ChristophH / in-lineage
  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
  ☆24Updated 6 years ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆24Updated 2 years ago
• Wei-BioMath / NeuronChat
  ☆39Updated last year
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆46Updated last year
• JiekaiLab / SOT
  Single-cell Orientation Tracing
  ☆21Updated 3 years ago
• pachterlab / LP_2021
  ☆48Updated last week
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 5 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated 2 years ago
• yanailab / celseq2
  Generate the UMI count matrix from CEL-Seq2 sequencing data
  ☆20Updated 6 years ago