Alternatives and similar repositories for sisua

Users that are interested in sisua are comparing it to the libraries listed below

• fabriziocosta / GraphEmbed
  Compute a 2D embedding of a data matrix given supervised class information.
  ☆12Updated 5 years ago
• davidbuterez / CellVGAE
  An unsupervised scRNA-seq analysis workflow with graph attention networks
  ☆23Updated 2 years ago
• nicococo / scRNA
  Python framework for single-cell RNA-seq clustering with special focus on transfer learning.
  ☆18Updated 5 years ago
• jlakkis / CarDEC
  ☆19Updated 4 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 7 months ago
• yycunc / SAMEclustering
  SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆15Updated 4 years ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago
• yycunc / SAFEclustering
  SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data
  ☆17Updated 4 years ago
• wagnerde / STITCH
  Assembles a graph manifold from time series single-cell RNAseq data
  ☆17Updated 4 years ago
• thomasmaxwellnorman / Perturbseq_GI
  Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"
  ☆53Updated 4 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆62Updated 10 months ago
• bioFAM / slalom
  ☆29Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆75Updated 5 months ago
• SindiLab / ACTIVA
  The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…
  ☆11Updated 2 years ago
• martinjzhang / single_cell_eb
  Empirical Bayes methods for single cell data
  ☆16Updated 4 years ago
• seasamgo / rescue
  Bootstrap imputation for scRNAseq data
  ☆12Updated 4 years ago
• chenlingantelope / HarmonizationSCANVI
  Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper
  ☆13Updated 2 years ago
• NikolayOskolkov / DeepLearningSingleCellBiology
  Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis
  ☆19Updated 6 years ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆33Updated 4 months ago
• ZJUFanLab / scDeepSort_performance_comparison
  The source code and results for different methods on annotating external testing datsets of human and mouse.
  ☆12Updated 4 years ago
• eugenelin1 / DRA
  ☆16Updated 4 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆38Updated 3 years ago
• ChengF-Lab / autoCell
  ☆16Updated 2 years ago
• AltschulerWu-Lab / scScope
  ☆49Updated 5 years ago
• caleblareau / asap_reproducibility
  Reproducing all analyses and figures for the ASAP-seq paper
  ☆29Updated 3 years ago
• ushaham / BatchEffectRemoval
  ☆55Updated 5 years ago
• shawnstat / EDGE
  EDGE
  ☆15Updated 4 years ago