LungCellAtlas / mapping_data_to_the_HLCALinks
Repository to perform mapping of new datasets to the Human Lung Cell Atlas.
☆19Updated 2 years ago
Alternatives and similar repositories for mapping_data_to_the_HLCA
Users that are interested in mapping_data_to_the_HLCA are comparing it to the libraries listed below
Sorting:
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- .h5mu files interface for Seurat☆32Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- ☆35Updated 5 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated this week
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- ☆40Updated 2 weeks ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 7 months ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- Benchmark of GRNs using the GRETA pipeline☆27Updated this week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last week
- CAST package☆40Updated 10 months ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated last week
- Information-based dimensionality reduction☆29Updated 8 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated this week
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆20Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last week
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago