broadinstitute / BipolarCell2016
☆22Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for BipolarCell2016
- ☆33Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Clone identification from single-cell data☆59Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆43Updated 3 years ago
- ☆29Updated 5 years ago
- R code for single-cell analysis of intestinal epithelial cells☆21Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- ☆37Updated 3 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- ☆31Updated 5 years ago
- An R-based interface for loom files☆63Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- ☆20Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- ☆46Updated last year
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated last year
- ☆53Updated 3 years ago
- ATAC-seq lab for BIOINF545☆25Updated 8 months ago
- ☆16Updated 5 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Updated last year