theislab / cellrank_reproducibilityLinks
CellRank's reproducibility repository.
☆15Updated 3 years ago
Alternatives and similar repositories for cellrank_reproducibility
Users that are interested in cellrank_reproducibility are comparing it to the libraries listed below
Sorting:
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆34Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- ☆56Updated 3 weeks ago
- analysis script for GBM single cell RNA seq data☆21Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- ☆58Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 9 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 2 weeks ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated 5 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago