theislab / cellrank_reproducibilityLinks
CellRank's reproducibility repository.
☆16Updated 3 years ago
Alternatives and similar repositories for cellrank_reproducibility
Users that are interested in cellrank_reproducibility are comparing it to the libraries listed below
Sorting:
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆36Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- ☆60Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 5 years ago
- ☆62Updated last year
- ☆50Updated 5 years ago
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆47Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 6 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆20Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated last month
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆35Updated last month
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated last week
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 3 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆25Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆34Updated 3 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 2 months ago