velocyto-team / velocyto-notebooksLinks
☆57Updated 7 years ago
Alternatives and similar repositories for velocyto-notebooks
Users that are interested in velocyto-notebooks are comparing it to the libraries listed below
Sorting:
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 11 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Single-cell RNA-seq Gene Expression Recovery☆112Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- ☆71Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- R package to access DoRothEA's regulons☆152Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆124Updated 7 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- Doublet detection in single-cell RNA-seq data.☆96Updated 10 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆82Updated 9 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 3 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- Single cell omics biology annotations☆51Updated 8 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- ☆131Updated 2 years ago
- trajectory inference☆105Updated 10 months ago
- ☆63Updated 5 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆102Updated last week