velocyto-team / velocyto-notebooksLinks
☆55Updated 7 years ago
Alternatives and similar repositories for velocyto-notebooks
Users that are interested in velocyto-notebooks are comparing it to the libraries listed below
Sorting:
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- Single-Cell Clustering Assessment Framework☆102Updated last year
- ☆59Updated 9 months ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆21Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 5 months ago
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- ☆46Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated 2 years ago
- ☆35Updated 3 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- ☆62Updated 5 years ago
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- Tools used in Human Cell Landscape(HCL)☆54Updated 4 years ago
- Using TCR and expression for sequence embedding☆56Updated 4 months ago
- ☆35Updated 9 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year