velocyto-team / velocyto-notebooksLinks
☆57Updated 7 years ago
Alternatives and similar repositories for velocyto-notebooks
Users that are interested in velocyto-notebooks are comparing it to the libraries listed below
Sorting:
- Single-cell RNA-seq Gene Expression Recovery☆114Updated last year
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation☆46Updated 6 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- R package to access DoRothEA's regulons☆154Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- Create cisTarget databases☆55Updated 7 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Doublet detection in single-cell RNA-seq data.☆97Updated 11 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Updated 2 months ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated 2 years ago
- ☆71Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆97Updated 8 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆27Updated 3 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆127Updated 8 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month