☆57May 22, 2018Updated 7 years ago
Alternatives and similar repositories for velocyto-notebooks
Users that are interested in velocyto-notebooks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA velocity estimation in Python☆174Oct 7, 2025Updated 6 months ago
- ☆36Nov 29, 2021Updated 4 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Nov 6, 2021Updated 4 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆10Feb 1, 2025Updated last year
- Python implementation of the Loom file format - http://loompy.org☆150Dec 16, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆21Aug 17, 2017Updated 8 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Apr 14, 2021Updated 5 years ago
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 5 months ago
- ☆27Apr 18, 2018Updated 8 years ago
- RNA Velocity generalized through dynamical modeling☆496Feb 25, 2026Updated last month
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Codes for our paper "Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming" published by Cell S…☆11Sep 5, 2020Updated 5 years ago
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Apr 1, 2020Updated 6 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Jan 22, 2020Updated 6 years ago
- RNA velocity estimation in R☆196Sep 14, 2023Updated 2 years ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Mar 16, 2026Updated last month
- ☆17Nov 5, 2024Updated last year
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆25Nov 4, 2025Updated 5 months ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- ☆10Dec 8, 2023Updated 2 years ago
- A software package for analyzing snapshots of developmental processes☆161Sep 15, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- ☆69May 2, 2018Updated 7 years ago
- Notebook and examples related to La Manno and Gyllborg et al. 2016☆16Mar 4, 2017Updated 9 years ago
- ☆16May 22, 2025Updated 10 months ago
- Code and scripts used in analysis of snRNAseq cerebellar cortex atlas☆13Oct 11, 2021Updated 4 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆142Dec 25, 2021Updated 4 years ago
- CellRank: dynamics from multi-view single-cell data☆439Apr 6, 2026Updated last week
- ☆13Apr 4, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code to reproduce analyses and figures for Kamath et al., 2022☆12May 5, 2022Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Dec 16, 2019Updated 6 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆51Aug 9, 2025Updated 8 months ago
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- ☆17Apr 9, 2021Updated 5 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago