velocyto-team / velocyto-notebooks
☆55Updated 6 years ago
Alternatives and similar repositories for velocyto-notebooks:
Users that are interested in velocyto-notebooks are comparing it to the libraries listed below
- Single-Cell Clustering Assessment Framework☆99Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆37Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆59Updated 6 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated 11 months ago
- ☆69Updated 11 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 8 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆31Updated 9 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆40Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- ☆59Updated 5 years ago
- Single Cell Analysis of Five'Ends☆48Updated last year
- ☆49Updated 7 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Create cisTarget databases☆46Updated last month
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆70Updated last year
- ☆57Updated 4 years ago
- ☆60Updated 4 years ago
- ☆46Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆52Updated last year
- A docker image for single-cell analysis☆82Updated last month
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 8 months ago