JunyueC / sci-CAR_analysisLinks
Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing
☆15Updated 7 years ago
Alternatives and similar repositories for sci-CAR_analysis
Users that are interested in sci-CAR_analysis are comparing it to the libraries listed below
Sorting:
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Updated last year
- ☆54Updated last year
- Repo for website and other code for mouse sci-ATAC-seq project☆29Updated 5 years ago
- ☆47Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆25Updated 6 months ago
- ☆17Updated 6 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 6 years ago
- ☆33Updated last year
- ☆20Updated 6 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆45Updated 4 months ago
- <<------ Use SnapATAC!!☆26Updated 6 years ago
- Mapping pipeline for snmC-seq based technologies.☆20Updated 2 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- scWGCNA☆61Updated 3 years ago
- ☆34Updated 6 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 3 years ago
- ☆30Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- ☆39Updated 4 years ago