Alternatives and similar repositories for AAF

Users that are interested in AAF are comparing it to the libraries listed below

• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated 8 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 5 months ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• KorfLab / CEGMA_v2
  The final version 2 release of our software to detect core genes in eukaryotic genomes
  ☆29Updated 10 years ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• etabari / PorthoMCL
  Parallel implementation of OrthoMCL
  ☆21Updated 3 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆25Updated 4 years ago
• laurentnoe / yass
  genomic alignment similarity search tool
  ☆18Updated 7 months ago
• jasperlinthorst / reveal
  Graph based multi genome aligner
  ☆49Updated 4 years ago
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆34Updated 7 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated 2 months ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 6 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 4 months ago
• wen-biao / OM-HiC-scaffolding
  Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
  ☆20Updated 5 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆20Updated 4 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆29Updated last year
• bcgsc / xmatchview
  🗻 Visualization of genome/gene sequence synteny
  ☆42Updated 2 years ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆34Updated 2 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 8 months ago
• PacificBiosciences / FALCON_unzip
  Making diploid assembly becomes common practice for genomic study
  ☆30Updated 8 years ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆30Updated 3 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆29Updated 4 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• benedictpaten / marginPhase
  ☆35Updated 5 years ago