brentp / nim-kmer
DNA kmer operations for nim
☆14Updated 2 years ago
Alternatives and similar repositories for nim-kmer:
Users that are interested in nim-kmer are comparing it to the libraries listed below
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16Updated 4 years ago
- use the noise☆15Updated 4 years ago
- useful command-line tools written to showcase hts-nim☆49Updated 4 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 4 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated last year
- Nim Library for sequence (protein/nucleotide) bioinformatics☆22Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆13Updated last year
- A collection of CSV/TSV Utilities☆12Updated 4 years ago
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆18Updated 6 months ago
- ☆14Updated 4 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 3 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- ☆22Updated 3 months ago
- Variant call adjudication☆16Updated 8 months ago
- Hidden Markov Model based Copy number caller☆20Updated 4 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆50Updated 3 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 7 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- horizontal pileup☆16Updated 2 years ago
- Polygenic score calculation from VCF in Nim.☆15Updated 4 years ago
- Non-parametric structural variant genotyper☆15Updated 3 years ago
- Structural variant pipeline☆17Updated 4 years ago
- ☆9Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- ziglang + htslib☆20Updated 3 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago