tbrown91 / SimBac
Source code for SimBac, a bacterial genome simulator
☆13Updated last month
Related projects ⓘ
Alternatives and complementary repositories for SimBac
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- A Pedantic FASTA Parser and Tool Set☆14Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆33Updated last year
- gia: Genomic Interval Arithmetic☆51Updated 2 months ago
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 3 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 6 months ago
- Bioinformatics Open Source Sequence machine☆33Updated last year
- Generate random test data for bioinformatics☆25Updated 4 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- sfasta☆33Updated 3 months ago
- Bidirectional WFA (Paper)☆41Updated 5 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆20Updated 3 weeks ago
- Fasten toolkit, for streaming operations on fastq files☆76Updated 8 months ago
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- ☆21Updated last year
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago
- bioinformatics toolkit in rust☆78Updated 5 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Filter of Pairwise Alignement☆44Updated 2 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆51Updated 2 years ago
- Reference-guided multiple sequence alignment of viral genomes☆61Updated last month
- GBWT-based handle graph☆30Updated this week
- A lightweight Python graphing API for genomic features☆15Updated 2 years ago
- Kraken2 Server☆21Updated 9 months ago
- Example of SGTK application for E.coli dataset:☆30Updated 4 years ago
- Tandem Repeat Annotation Library☆24Updated last year