kalininalab / metaprofi
MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant genetic variants
☆12Updated 3 years ago
Alternatives and similar repositories for metaprofi
Users that are interested in metaprofi are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆29Updated last month
- ☆45Updated 3 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆27Updated 8 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated last month
- Better Alignments with Translated HMMER☆21Updated this week
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- Variant call verification☆16Updated last week
- Convert genbank files to a swath of other formats☆18Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last month
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- finding conserved regions in highly diverse genomes☆15Updated 9 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆34Updated last week
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆10Updated 2 weeks ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- ☆13Updated 7 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated 2 weeks ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated this week
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 5 months ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- A novel method for sequence similarity estimation☆28Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Manipulate and generate figures for trees in Newick format☆21Updated 3 months ago