Alternatives and similar repositories for phd

Users that are interested in phd are comparing it to the libraries listed below

• sourmash-bio / wort
  A database for signatures of public genomic sources
  ☆18Updated 4 months ago
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated 2 years ago
• shenwei356 / ncbi_acc2gtdb_acc
  Mapping NCBI Genbank accession to GTDB accession
  ☆14Updated 4 years ago
• sourmash-bio / mastiff
  ☆16Updated last year
• camillescott / shmlast
  blast, shmlast
  ☆22Updated 4 years ago
• edamame-course / 2016-tutorials
  repo for 2016 EDAMAME tutorials
  ☆11Updated 8 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• xa6xa6 / metaOthello
  ☆16Updated 7 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• roblanf / minion_multiQC
  multi-tool QC for minion data
  ☆9Updated 7 years ago
• onecodex / sars-cov-2
  SARS-CoV-2 variant calling and consensus assembly pipeline
  ☆25Updated last year
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated last month
• phiweger / darkq
  A message queue for genomic surveillance
  ☆20Updated 3 years ago
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 7 years ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆21Updated 7 years ago
• cbg-ethz / smallgenomeutilities
  smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.
  ☆11Updated last month
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated 2 years ago
• iqbal-lab-org / simutator
  Simulate mutations in genomes
  ☆15Updated 5 years ago
• epruesse / ymp
  Flexible omics pipeline
  ☆18Updated 2 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆32Updated 6 months ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆11Updated last year
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated 2 years ago
• tanaes / snakemake_assemble
  Modular snakemake workflow for assembly-based metagenomics
  ☆10Updated 7 years ago
• ctb / titus-blog
  My blog.
  ☆16Updated 6 months ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated 2 years ago
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆14Updated 6 months ago