☆14Oct 14, 2020Updated 5 years ago
Alternatives and similar repositories for phd
Users that are interested in phd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jan 21, 2024Updated 2 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 4 months ago
- An R Markdown template using the bookdown package for preparing a PhD thesis at the University of California Davis☆16Dec 6, 2023Updated 2 years ago
- notes on the farm cluster☆16Feb 26, 2025Updated last year
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 4 months ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 2 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 4 months ago
- Build sourmash databases for genbank.☆10May 4, 2023Updated 3 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25May 11, 2026Updated last week
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆119Jan 29, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Metagenomics Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH☆10Oct 31, 2016Updated 9 years ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆43Apr 6, 2026Updated last month
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 6 years ago
- 🧬 Efficient parallelized peta-scale protein database search☆40Jan 4, 2024Updated 2 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- Rust & WebAssembly Workshop☆33Oct 31, 2022Updated 3 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Oct 20, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 4 years ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Sep 21, 2018Updated 7 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆35Apr 1, 2026Updated last month
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Simple and transparent support for compressed files.☆81Apr 29, 2026Updated 3 weeks ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An adaption of the Koshkina et al. 2017 IDSM☆10Aug 19, 2025Updated 9 months ago
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated 10 months ago
- Protein Alignment and Detection Interface☆60Apr 1, 2024Updated 2 years ago
- ☆27Updated this week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 9 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month