☆15Oct 14, 2020Updated 6 years ago
Alternatives and similar repositories for phd
Users that are interested in phd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jan 21, 2024Updated 2 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- An R Markdown template using the bookdown package for preparing a PhD thesis at the University of California Davis☆16Dec 6, 2023Updated 2 years ago
- notes on the farm cluster☆16Feb 26, 2025Updated last year
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Working with the outputs of sourmash in R☆29Jan 15, 2026Updated 9 months ago
- ☆14Jul 30, 2026Updated 3 months ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 3 years ago
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated 9 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes☆13Sep 12, 2026Updated last month
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Oct 19, 2026Updated last week
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Skip-mer tools☆10Sep 4, 2021Updated 5 years ago
- A tutorial for Metagenome-Atlas☆23Nov 24, 2023Updated 2 years ago
- Benchmark data structures for kmer sets.☆13Aug 29, 2026Updated 2 months ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 8 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- Metagenomics Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH☆10Oct 31, 2016Updated 10 years ago
- Functional Flow Calculator☆14Oct 11, 2024Updated 2 years ago
- An R client for the online Functional Flows Calculator API☆11Mar 23, 2023Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆57Jul 6, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Rust & WebAssembly Workshop☆33Oct 31, 2022Updated 4 years ago
- Repository with materials for the Speeding Up Science Workshops at UC Davis☆10Oct 31, 2019Updated 7 years ago
- ☆14Sep 11, 2026Updated last month
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆20Sep 21, 2018Updated 8 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Oct 20, 2023Updated 3 years ago
- Exact rational and computable real arithmetic for Rust.☆16Oct 5, 2026Updated 3 weeks ago
- Analyzing sketching and sampling approaches for fast and accurate read classification☆10Aug 30, 2022Updated 4 years ago
- Tools and utilities for making use of mastiff☆12Mar 10, 2023Updated 3 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- A SIMD-accelerated library to compute random minimizers☆49Updated this week
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- Simple and transparent support for compressed files.☆81Sep 23, 2026Updated last month
- Protein Alignment and Detection Interface☆61Apr 1, 2024Updated 2 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago