xbiome / StrainPanDALinks
A method for reconstruction of subspecies composition and functional profiles from metagenomic data
☆13Updated last year
Alternatives and similar repositories for StrainPanDA
Users that are interested in StrainPanDA are comparing it to the libraries listed below
Sorting:
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 8 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Highly sensitive pathogen detection☆11Updated 5 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- De novo VIral Genome Annotator☆23Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 4 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Dadaist2 🟨 Highway to R☆13Updated 7 months ago
- Neptune: Genomic Signature Discovery☆20Updated 10 months ago
- Genomic sequence aligner☆31Updated 3 weeks ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- software to identify primers that can distinguish genomes☆20Updated 8 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆30Updated 2 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- metagenome population recombination rate estimation pipeline☆12Updated last week
- sunburst plots for taxonomy - working to update Krona☆39Updated 2 weeks ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆16Updated 3 weeks ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- A novel method for sequence similarity estimation☆28Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆19Updated last year
- C++ tools for NCBI taxonomy tasks☆11Updated 3 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆32Updated 11 months ago